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  5. LOC_Os07g44210.1

LOC_Os07g44210.1 (CHA18, CHR18, LOC_Os07g44210)


Aliases : CHA18, CHR18, LOC_Os07g44210

Description : chromatin remodeling factor (SMARCAL1)


Gene families : OG0002390 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002390_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g44210.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00110p00037960 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.05 OrthoFinder output from all 47 species
Adi_g021948 CHA18, CHR18 chromatin remodeling factor *(SMARCAL1) & original... 0.03 OrthoFinder output from all 47 species
Aev_g30548 CHA18, CHR18 chromatin remodeling factor *(SMARCAL1) & original... 0.02 OrthoFinder output from all 47 species
Als_g04445 CHA18, CHR18 chromatin remodeling factor *(SMARCAL1) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene71045.t1 CHA18, CHR18,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g13820 CHA18, CHR18 chromatin remodeling factor *(SMARCAL1) & original... 0.02 OrthoFinder output from all 47 species
Ceric.09G005400.1 CHA18, CHR18,... chromatin remodeling factor *(SMARCAL1) & original... 0.05 OrthoFinder output from all 47 species
Cre12.g494200 No alias No description available 0.01 OrthoFinder output from all 47 species
Gb_30392 No alias chromatin remodeling factor (SMARCAL1) 0.03 OrthoFinder output from all 47 species
Lfl_g02206 CHA18, CHR18 chromatin remodeling factor *(SMARCAL1) & original... 0.02 OrthoFinder output from all 47 species
MA_10436787g0010 No alias no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Nbi_g10624 CHA18, CHR18 chromatin remodeling factor *(SMARCAL1) & original... 0.03 OrthoFinder output from all 47 species
Ore_g03373 CHA18, CHR18 chromatin remodeling factor *(SMARCAL1) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e035658_P002 CHA18, CHR18,... chromatin remodeling factor (SMARCAL1) 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009452 7-methylguanosine RNA capping IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0032259 methylation IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0036260 RNA capping IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0071586 CAAX-box protein processing IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000330 SNF2_N 273 520
IPR001650 Helicase_C 561 665
No external refs found!