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  5. LOC_Os07g43740.1

LOC_Os07g43740.1 (LOC_Os07g43740)


Aliases : LOC_Os07g43740

Description : no hits & (original description: none)


Gene families : OG0000101 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g43740.1

Target Alias Description ECC score Gene Family Method Actions
AT1G14200 No alias RING/U-box superfamily protein 0.09 OrthoFinder output from all 47 species
AT1G26800 No alias RING/U-box superfamily protein 0.06 OrthoFinder output from all 47 species
AT1G55530 No alias RING/U-box superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G10815 No alias RING/U-box superfamily protein 0.05 OrthoFinder output from all 47 species
Adi_g012553 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.01 OrthoFinder output from all 47 species
Adi_g066616 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ala_g04888 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g14925 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g22643 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g03081 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene15225.t1 Aspi01Gene15225 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene16608.t1 RHC1A, Aspi01Gene16608 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0038.g026224 No alias not classified & original description: CDS=1-687 0.03 OrthoFinder output from all 47 species
Azfi_s0230.g059174 No alias not classified & original description: CDS=1-867 0.03 OrthoFinder output from all 47 species
Ceric.06G020800.1 Ceric.06G020800 RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.14 OrthoFinder output from all 47 species
Ceric.06G020900.1 Ceric.06G020900 RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.05 OrthoFinder output from all 47 species
Dac_g13479 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Dde_g26594 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Ehy_g23378 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g16162 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.01 OrthoFinder output from all 47 species
Len_g22017 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Lfl_g40832 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Mp7g15970.1 No alias E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Msp_g25713 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g25986 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g36158 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g36482 ATCRT1 RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Pnu_g26717 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo18753 No alias Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder output from all 47 species
Solyc05g007895.1.1 Solyc05g007895 E3 ubiquitin-protein ligase MPSR1 OS=Arabidopsis... 0.22 OrthoFinder output from all 47 species
Spa_g20368 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g26018 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g00982 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e010857_P001 Zm00001e010857 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Zm00001e011788_P002 Zm00001e011788 E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp.... 0.03 OrthoFinder output from all 47 species
Zm00001e024003_P001 Zm00001e024003 E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 88 127
No external refs found!