LOC_Os07g37640.1 (ABO1, ELO2, LOC_Os07g37640)

Aliases : ABO1, ELO2, LOC_Os07g37640

Description : component ELP1 of ELONGATOR transcription elongation complex

Gene families : OG0006371 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006371_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os07g37640.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00012p00082490	ABO1, ELO2,...	RNA biosynthesis.RNA polymerase II-dependent...	0.04	OrthoFinder output from all 47 species
AT5G13680	ABO1, ELO2	IKI3 family protein	0.1	OrthoFinder output from all 47 species
Aev_g35033	ABO1, ELO2	component *(ELP1) of ELONGATOR transcription elongation...	0.04	OrthoFinder output from all 47 species
Aob_g11767	ABO1, ELO2	component *(ELP1) of ELONGATOR transcription elongation...	0.02	OrthoFinder output from all 47 species
Aop_g11869	ABO1, ELO2	component *(ELP1) of ELONGATOR transcription elongation...	0.02	OrthoFinder output from all 47 species
Azfi_s0658.g081281	ABO1, ELO2	component *(ELP1) of ELONGATOR transcription elongation...	0.03	OrthoFinder output from all 47 species
Ceric.14G027500.1	ABO1, ELO2,...	component *(ELP1) of ELONGATOR transcription elongation...	0.05	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000219.40	ABO1, ELO2	Elongator complex protein 1 OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
Cre08.g372500	No alias	RNA biosynthesis.RNA polymerase II-dependent...	0.02	OrthoFinder output from all 47 species
Dcu_g09746	ABO1, ELO2	component *(ELP1) of ELONGATOR transcription elongation...	0.02	OrthoFinder output from all 47 species
Dde_g01760	ABO1, ELO2	component *(ELP1) of ELONGATOR transcription elongation...	0.02	OrthoFinder output from all 47 species
Ehy_g14344	ABO1, ELO2	component *(ELP1) of ELONGATOR transcription elongation...	0.04	OrthoFinder output from all 47 species
GSVIVT01016590001	ABO1, ELO2	RNA biosynthesis.RNA polymerase II-dependent...	0.15	OrthoFinder output from all 47 species
Gb_20472	ABO1, ELO2	component ELP1 of ELONGATOR transcription elongation complex	0.06	OrthoFinder output from all 47 species
Len_g35376	ABO1, ELO2	component *(ELP1) of ELONGATOR transcription elongation...	0.02	OrthoFinder output from all 47 species
Mp2g09110.1	ABO1, ELO2	component ELP1 of ELONGATOR transcription elongation complex	0.03	OrthoFinder output from all 47 species
Ore_g19682	ABO1, ELO2	component *(ELP1) of ELONGATOR transcription elongation...	0.05	OrthoFinder output from all 47 species
Ppi_g43871	ABO1, ELO2	component *(ELP1) of ELONGATOR transcription elongation...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0051.g013975	No alias	component *(ELP1) of ELONGATOR transcription elongation...	0.03	OrthoFinder output from all 47 species
Sam_g08112	No alias	component *(ELP1) of ELONGATOR transcription elongation...	0.03	OrthoFinder output from all 47 species
Smo235886	ABO1, ELO2	RNA biosynthesis.RNA polymerase II-dependent...	0.03	OrthoFinder output from all 47 species
Solyc05g054630.4.1	ABO1, ELO2,...	component ELP1 of ELONGATOR transcription elongation complex	0.13	OrthoFinder output from all 47 species
Spa_g17971	ABO1, ELO2	component *(ELP1) of ELONGATOR transcription elongation...	0.03	OrthoFinder output from all 47 species
Zm00001e008063_P001	ABO1, ELO2,...	component ELP1 of ELONGATOR transcription elongation complex	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0002097	tRNA wobble base modification	None	Extended
BP	GO:0002098	tRNA wobble uridine modification	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006400	tRNA modification	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008033	tRNA processing	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0033588	elongator holoenzyme complex	IEA	Interproscan
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000176	nuclear exosome (RNase complex)	IEP	HCCA
CC	GO:0000178	exosome (RNase complex)	IEP	HCCA
MF	GO:0003674	molecular_function	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
MF	GO:0004527	exonuclease activity	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
CC	GO:0005643	nuclear pore	IEP	HCCA
BP	GO:0006298	mismatch repair	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
MF	GO:0008408	3'-5' exonuclease activity	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
MF	GO:0017056	structural constituent of nuclear pore	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
CC	GO:0030684	preribosome	IEP	HCCA
MF	GO:0030983	mismatched DNA binding	IEP	HCCA
CC	GO:0032040	small-subunit processome	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
CC	GO:1905354	exoribonuclease complex	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006849	Elp1	1	964

External Links

No external refs found!

LOC_Os07g37640.1 (ABO1, ELO2, LOC_Os07g37640)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation