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LOC_Os07g30110.1 (LOC_Os07g30110)


Aliases : LOC_Os07g30110

Description : Spindle and kinetochore-associated protein 1 homolog OS=Oryza sativa subsp. japonica (sp|q7xam0|ska1_orysj : 481.0)


Gene families : OG0007701 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007701_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g30110.1
Cluster HCCA: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
Aev_g19981 No alias component *(SKA1) of outer kinetochore SKA complex &... 0.04 OrthoFinder output from all 47 species
Als_g10777 No alias component *(SKA1) of outer kinetochore SKA complex &... 0.03 OrthoFinder output from all 47 species
Aspi01Gene66523.t1 Aspi01Gene66523 component *(SKA1) of outer kinetochore SKA complex &... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000204.25 No alias No description available 0.06 OrthoFinder output from all 47 species
Cre16.g672500 No alias Spindle and kinetochore-associated protein 1 homolog... 0.07 OrthoFinder output from all 47 species
GSVIVT01027639001 No alias Spindle and kinetochore-associated protein 1 homolog... 0.12 OrthoFinder output from all 47 species
Gb_04472 No alias Spindle and kinetochore-associated protein 1 homolog... 0.08 OrthoFinder output from all 47 species
Lfl_g39702 No alias component *(SKA1) of outer kinetochore SKA complex &... 0.02 OrthoFinder output from all 47 species
Nbi_g00738 No alias component *(SKA1) of outer kinetochore SKA complex &... 0.08 OrthoFinder output from all 47 species
Smo407592 No alias Spindle and kinetochore-associated protein 1 homolog... 0.03 OrthoFinder output from all 47 species
Solyc05g050900.4.1 Solyc05g050900 Spindle and kinetochore-associated protein 1 homolog... 0.06 OrthoFinder output from all 47 species
Tin_g12539 No alias component *(SKA1) of outer kinetochore SKA complex &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0007059 chromosome segregation IEA Interproscan
MF GO:0008017 microtubule binding IEA Interproscan
BP GO:0051301 cell division IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000796 condensin complex IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
BP GO:0007076 mitotic chromosome condensation IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
BP GO:0030261 chromosome condensation IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
InterPro domains Description Start Stop
IPR009829 SKA1 23 266
No external refs found!