LOC_Os07g24090.1 (LOC_Os07g24090)

Aliases : LOC_Os07g24090

Description : transcription factor (mTERF)

Gene families : OG0000165 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000165_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os07g24090.1
Cluster	HCCA: Cluster_150

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00116710	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.03	OrthoFinder output from all 47 species
AMTR_s00010p00117910	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.07	OrthoFinder output from all 47 species
AMTR_s00010p00230750	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	OrthoFinder output from all 47 species
AMTR_s00010p00235760	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	OrthoFinder output from all 47 species
AMTR_s00038p00175390	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.03	OrthoFinder output from all 47 species
AMTR_s00060p00059830	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.05	OrthoFinder output from all 47 species
AMTR_s00066p00157220	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	OrthoFinder output from all 47 species
AMTR_s00084p00087230	PTAC15,...	RNA biosynthesis.organelle...	0.02	OrthoFinder output from all 47 species
AMTR_s00126p00036100	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	OrthoFinder output from all 47 species
AMTR_s01360p00009540	evm_27.TU.AmTr_v1...	RNA biosynthesis.organelle...	0.02	OrthoFinder output from all 47 species
AT1G21150	No alias	Mitochondrial transcription termination factor family protein	0.04	OrthoFinder output from all 47 species
AT1G61990	No alias	Mitochondrial transcription termination factor family protein	0.01	OrthoFinder output from all 47 species
AT1G62110	No alias	Mitochondrial transcription termination factor family protein	0.04	OrthoFinder output from all 47 species
AT3G46950	No alias	Mitochondrial transcription termination factor family protein	0.05	OrthoFinder output from all 47 species
AT5G23930	No alias	Mitochondrial transcription termination factor family protein	0.03	OrthoFinder output from all 47 species
Adi_g110583	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g07281	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g18494	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g22741	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g28440	EMB2219	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g17726	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene64007.t1	Aspi01Gene64007	mTERF-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g43868	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.30G015700.1	Ceric.30G015700	mTERF-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.31G027900.1	Ceric.31G027900	mTERF-type transcription factor & original description:...	0.02	OrthoFinder output from all 47 species
Dac_g18393	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g31748	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g02967	No alias	mTERF-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Dcu_g22736	No alias	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g24025	No alias	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g48743	PTAC15	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g10365	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g13389	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g17694	PTAC15	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01022213001	No alias	RNA biosynthesis.organelle...	0.02	OrthoFinder output from all 47 species
GSVIVT01028380001	No alias	RNA biosynthesis.organelle...	0.03	OrthoFinder output from all 47 species
Gb_06120	PTAC15	TAC15 cofactor of plastid-encoded RNA polymerase....	0.02	OrthoFinder output from all 47 species
Gb_07257	PTAC15	TAC15 cofactor of plastid-encoded RNA polymerase....	0.05	OrthoFinder output from all 47 species
Gb_12368	No alias	transcription factor (mTERF)	0.02	OrthoFinder output from all 47 species
Gb_15878	No alias	transcription factor (mTERF)	0.03	OrthoFinder output from all 47 species
Gb_26176	No alias	transcription factor (mTERF)	0.04	OrthoFinder output from all 47 species
Lfl_g08103	No alias	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
MA_192398g0010	No alias	transcription factor (mTERF)	0.03	OrthoFinder output from all 47 species
MA_28540g0010	No alias	transcription factor (mTERF)	0.01	OrthoFinder output from all 47 species
MA_31885g0010	No alias	transcription factor (mTERF)	0.03	OrthoFinder output from all 47 species
MA_493420g0010	No alias	transcription factor (mTERF)	0.01	OrthoFinder output from all 47 species
MA_57842g0010	No alias	transcription factor (mTERF)	0.01	OrthoFinder output from all 47 species
MA_804585g0010	PTAC15	transcription factor (mTERF)	0.02	OrthoFinder output from all 47 species
MA_86824g0010	No alias	transcription factor (mTERF)	0.02	OrthoFinder output from all 47 species
MA_92135g0010	No alias	transcription factor (mTERF)	0.02	OrthoFinder output from all 47 species
Msp_g47549	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g17587	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g26508	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g35894	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g33567	No alias	mTERF-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g32507	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g18975	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Smo77318	EMB93, SOLDAT10	RNA biosynthesis.organelle...	0.02	OrthoFinder output from all 47 species
Solyc04g011700.2.1	Solyc04g011700	transcription factor (mTERF)	0.03	OrthoFinder output from all 47 species
Solyc04g072500.1.1	Solyc04g072500	transcription factor (mTERF)	0.01	OrthoFinder output from all 47 species
Solyc04g072520.3.1	Solyc04g072520	transcription factor (mTERF)	0.03	OrthoFinder output from all 47 species
Spa_g30296	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g17278	No alias	mTERF-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e013884_P001	Zm00001e013884	transcription factor (mTERF)	0.03	OrthoFinder output from all 47 species
Zm00001e018894_P001	Zm00001e018894	transcription factor (mTERF)	0.03	OrthoFinder output from all 47 species
Zm00001e022322_P001	Zm00001e022322	transcription factor (mTERF)	0.03	OrthoFinder output from all 47 species
Zm00001e027097_P001	Zm00001e027097	transcription factor (mTERF)	0.04	OrthoFinder output from all 47 species
Zm00001e031638_P001	Zm00001e031638	transcription factor (mTERF)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEP	HCCA
MF	GO:0003678	DNA helicase activity	IEP	HCCA
MF	GO:0003712	transcription coregulator activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006334	nucleosome assembly	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
CC	GO:0016592	mediator complex	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
CC	GO:0030117	membrane coat	IEP	HCCA
CC	GO:0030118	clathrin coat	IEP	HCCA
CC	GO:0030120	vesicle coat	IEP	HCCA
CC	GO:0030125	clathrin vesicle coat	IEP	HCCA
CC	GO:0030130	clathrin coat of trans-Golgi network vesicle	IEP	HCCA
CC	GO:0030132	clathrin coat of coated pit	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
CC	GO:0032993	protein-DNA complex	IEP	HCCA
BP	GO:0034728	nucleosome organization	IEP	HCCA
BP	GO:0043933	protein-containing complex organization	IEP	HCCA
CC	GO:0044815	DNA packaging complex	IEP	HCCA
BP	GO:0065003	protein-containing complex assembly	IEP	HCCA
BP	GO:0065004	protein-DNA complex assembly	IEP	HCCA
BP	GO:0071824	protein-DNA complex subunit organization	IEP	HCCA
CC	GO:0098797	plasma membrane protein complex	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003690	MTERF	68	176
IPR003690	MTERF	211	377

External Links

No external refs found!

LOC_Os07g24090.1 (LOC_Os07g24090)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation