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  5. LOC_Os07g08710.1

LOC_Os07g08710.1 (LOC_Os07g08710)


Aliases : LOC_Os07g08710

Description : linker histone (H1)


Gene families : OG0000310 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000310_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os07g08710.1
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00264270 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H1 linker histone 0.03 OrthoFinder output from all 47 species
AT1G06760 No alias winged-helix DNA-binding transcription factor family protein 0.06 OrthoFinder output from all 47 species
AT2G30620 No alias winged-helix DNA-binding transcription factor family protein 0.05 OrthoFinder output from all 47 species
Adi_g052669 No alias linker histone *(H1) & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g088302 HIS1-3 linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g31757 HIS1-3 linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g04558 HIS1-3 linker histone *(H1) & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g23326 HIS1-3 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g05135 HIS1-3 linker histone *(H1) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g14110 No alias linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g36461 HIS1-3 linker histone *(H1) & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene11879.t1 HIS1-3, Aspi01Gene11879 linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene11880.t1 HIS1-3, Aspi01Gene11880 linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene25496.t1 HIS1-3, Aspi01Gene25496 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene61452.t1 HIS1-3, Aspi01Gene61452 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0049.g030788 No alias linker histone *(H1) & original description: CDS=1-786 0.03 OrthoFinder output from all 47 species
Ceric.05G101000.1 HIS1-3, Ceric.05G101000 linker histone *(H1) & original description:... 0.06 OrthoFinder output from all 47 species
Ceric.17G067800.1 HIS1-3, Ceric.17G067800 linker histone *(H1) & original description:... 0.06 OrthoFinder output from all 47 species
Ceric.34G011100.1 HIS1-3, Ceric.34G011100 linker histone *(H1) & original description:... 0.04 OrthoFinder output from all 47 species
Ceric.34G044200.1 Ceric.34G044200 linker histone *(H1) & original description:... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020780.71 HIS1-3 No description available 0.03 OrthoFinder output from all 47 species
Cre13.g567450 HIS1-3 Chromatin organisation.histones.H1 linker histone 0.11 OrthoFinder output from all 47 species
Dac_g20797 HIS1-3 linker histone *(H1) & original description: none 0.09 OrthoFinder output from all 47 species
Dcu_g00585 HIS1-3 linker histone *(H1) & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g02276 No alias linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g23302 No alias linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g05478 No alias linker histone *(H1) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g10146 HIS1-3 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g31405 HIS1-3 linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01028074001 No alias Chromatin organisation.histones.H1 linker histone 0.04 OrthoFinder output from all 47 species
GSVIVT01036230001 No alias Chromatin organisation.histones.H1 linker histone 0.04 OrthoFinder output from all 47 species
Gb_02738 No alias linker histone (H1) 0.09 OrthoFinder output from all 47 species
Gb_03348 HIS1-3 linker histone (H1) 0.05 OrthoFinder output from all 47 species
Gb_06547 HIS1-3 linker histone (H1) 0.02 OrthoFinder output from all 47 species
Len_g04604 HIS1-3 linker histone *(H1) & original description: none 0.04 OrthoFinder output from all 47 species
Len_g14042 HIS1-3 linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
Len_g23782 HIS1-3 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g27513 HIS1-3 linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
MA_102457g0010 No alias linker histone (H1) 0.09 OrthoFinder output from all 47 species
MA_10436125g0010 HIS1-3 linker histone (H1) 0.05 OrthoFinder output from all 47 species
MA_10436125g0020 ATTRB1, TRB1 linker histone (H1) 0.03 OrthoFinder output from all 47 species
MA_500183g0010 HIS1-3 linker histone (H1) 0.08 OrthoFinder output from all 47 species
MA_5951905g0010 HIS1-3 linker histone (H1) 0.03 OrthoFinder output from all 47 species
MA_877599g0010 No alias linker histone (H1) 0.02 OrthoFinder output from all 47 species
Mp6g03150.1 HIS1-3 linker histone (H1) 0.03 OrthoFinder output from all 47 species
Msp_g09818 HIS1-3 linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g04093 HIS1-3 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g10947 HIS1-3 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c18_14270V3.1 Pp3c18_14270 winged-helix DNA-binding transcription factor family protein 0.03 OrthoFinder output from all 47 species
Sam_g11041 No alias linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g11042 No alias linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc09g066100.3.1 Solyc09g066100 linker histone (H1) 0.07 OrthoFinder output from all 47 species
Solyc09g083380.4.1 Solyc09g083380 linker histone (H1) 0.1 OrthoFinder output from all 47 species
Spa_g09322 HIS1-3 linker histone *(H1) & original description: none 0.08 OrthoFinder output from all 47 species
Spa_g09323 HIS1-3 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g09324 HIS1-3 linker histone *(H1) & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g18792 HIS1-3 linker histone *(H1) & original description: none 0.07 OrthoFinder output from all 47 species
Spa_g31027 HIS1-3 linker histone *(H1) & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g50934 HIS1-3 linker histone *(H1) & original description: none 0.09 OrthoFinder output from all 47 species
Spa_g50935 HIS1-3 linker histone *(H1) & original description: none 0.12 OrthoFinder output from all 47 species
Tin_g01715 HIS1-3 linker histone *(H1) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e006018_P006 Zm00001e006018 linker histone (H1) 0.09 OrthoFinder output from all 47 species
Zm00001e007189_P001 HIS1-3, Zm00001e007189 linker histone (H1) 0.07 OrthoFinder output from all 47 species
Zm00001e011857_P001 Zm00001e011857 linker histone (H1) 0.09 OrthoFinder output from all 47 species
Zm00001e011859_P001 Zm00001e011859 linker histone (H1) 0.06 OrthoFinder output from all 47 species
Zm00001e032965_P005 Zm00001e032965 linker histone (H1) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006334 nucleosome assembly IEA Interproscan
CC GO:0042025 host cell nucleus IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009262 deoxyribonucleotide metabolic process IEP HCCA
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP HCCA
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP HCCA
MF GO:0019207 kinase regulator activity IEP HCCA
MF GO:0019887 protein kinase regulator activity IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR005818 Histone_H1/H5_H15 76 143
No external refs found!