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  5. LOC_Os06g48240.1

LOC_Os06g48240.1 (LOC_Os06g48240)


Aliases : LOC_Os06g48240

Description : AAA-ATPase At3g28580 OS=Arabidopsis thaliana (sp|q9ljj7|aatp9_arath : 261.0)


Gene families : OG0000163 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000163_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g48240.1
Cluster HCCA: Cluster_182

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00014p00241930 BCS1,... Protein HYPER-SENSITIVITY-RELATED 4 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00019p00244830 AATP1,... AAA-ATPase At3g50940 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AMTR_s00036p00176790 BCS1,... Protein HYPER-SENSITIVITY-RELATED 4 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
AT2G18193 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 OrthoFinder output from all 47 species
AT3G28510 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 OrthoFinder output from all 47 species
AT3G28540 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 OrthoFinder output from all 47 species
AT3G28570 No alias P-loop containing nucleoside triphosphate hydrolases... 0.03 OrthoFinder output from all 47 species
AT3G28600 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 OrthoFinder output from all 47 species
AT4G25835 No alias P-loop containing nucleoside triphosphate hydrolases... 0.02 OrthoFinder output from all 47 species
AT5G17760 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 OrthoFinder output from all 47 species
AT5G40000 No alias P-loop containing nucleoside triphosphate hydrolases... 0.05 OrthoFinder output from all 47 species
Adi_g016569 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g031480 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g054385 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g054957 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g077316 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g115155 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g08283 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g30887 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g28309 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g28310 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g31916 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g38293 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g05196 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g06181 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g32826 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g36939 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g55732 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene06431.t1 Aspi01Gene06431 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene30040.t1 Aspi01Gene30040 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene51124.t1 Aspi01Gene51124 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g22117 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G052300.1 Ceric.01G052300 not classified & original description: pacid=50592955... 0.03 OrthoFinder output from all 47 species
Ceric.19G070900.1 Ceric.19G070900 not classified & original description: pacid=50575977... 0.03 OrthoFinder output from all 47 species
Ceric.19G071000.1 Ceric.19G071000 not classified & original description: pacid=50575763... 0.04 OrthoFinder output from all 47 species
Ceric.19G071900.1 Ceric.19G071900 not classified & original description: pacid=50575289... 0.02 OrthoFinder output from all 47 species
Ceric.19G072100.1 Ceric.19G072100 not classified & original description: pacid=50575999... 0.03 OrthoFinder output from all 47 species
Dac_g09976 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g30278 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dac_g34932 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g05212 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g08200 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g11863 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g17234 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g17092 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g51413 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g10044 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g11177 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g16997 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g23306 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01010368001 No alias AAA-ATPase At3g50940 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01023336001 No alias AAA-ATPase At3g28600 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01027397001 No alias AAA-ATPase At2g46620 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01029545001 No alias AAA-ATPase At3g50940 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01032552001 No alias AAA-ATPase At3g28580 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01032554001 AATP1 AAA-ATPase ASD, mitochondrial OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_16063 No alias AAA-ATPase At2g46620 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Gb_34238 No alias AAA-ATPase At5g57480 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
LOC_Os01g19260.1 AATP1, LOC_Os01g19260 AAA-ATPase At3g28580 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
LOC_Os12g24320.1 AATP1, LOC_Os12g24320 AAA-ATPase ASD, mitochondrial OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
MA_10067279g0010 No alias AAA-ATPase At5g57480 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_10426157g0010 No alias AAA-ATPase At4g25835 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_10435468g0020 No alias AAA-ATPase At3g28510 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_296237g0010 No alias AAA-ATPase At5g57480 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
MA_296237g0020 BCS1 Protein HYPER-SENSITIVITY-RELATED 4 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
MA_344969g0010 No alias AAA-ATPase At4g25835 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
MA_56516g0010 No alias AAA-ATPase At3g28570, mitochondrial OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Msp_g14679 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g26702 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g33481 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g04503 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo413949 No alias AAA-ATPase At4g30250 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Solyc02g062550.3.1 BCS1, Solyc02g062550 Protein HYPER-SENSITIVITY-RELATED 4 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc02g087540.3.1 Solyc02g087540 AAA-ATPase At3g28510 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc03g033790.4.1 BCS1, Solyc03g033790 Protein HYPER-SENSITIVITY-RELATED 4 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc03g033840.4.1 BCS1, Solyc03g033840 Protein HYPER-SENSITIVITY-RELATED 4 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Solyc05g015060.4.1 Solyc05g015060 AAA-ATPase At3g50940 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Solyc10g007280.4.1 BCS1, Solyc10g007280 Protein HYPER-SENSITIVITY-RELATED 4 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Spa_g30426 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g42317 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e003357_P001 AATP1, Zm00001e003357 AAA-ATPase ASD, mitochondrial OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e011416_P001 Zm00001e011416 AAA-ATPase At3g28510 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Zm00001e012527_P001 Zm00001e012527 AAA-ATPase At2g46620 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e033043_P001 Zm00001e033043 AAA-ATPase At3g28580 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Zm00001e038158_P001 AATP1, Zm00001e038158 AAA-ATPase At3g28580 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006643 membrane lipid metabolic process IEP HCCA
BP GO:0006664 glycolipid metabolic process IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009247 glycolipid biosynthetic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
BP GO:0046467 membrane lipid biosynthetic process IEP HCCA
BP GO:0046903 secretion IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:0140352 export from cell IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1903509 liposaccharide metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR025753 AAA_N_dom 30 123
IPR003959 ATPase_AAA_core 268 428
No external refs found!