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  5. LOC_Os06g40880.1

LOC_Os06g40880.1 (LOC_Os06g40880)


Aliases : LOC_Os06g40880

Description : Probable galacturan 1,4-alpha-galacturonidase SALK6 OS=Kali turgidum (sp|w8p8q3|salk6_kaltu : 266.0) & Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase(50.3.2 : 244.8)


Gene families : OG0003404 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003404_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g40880.1
Cluster HCCA: Cluster_149

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00055210 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectin lyase 0.03 OrthoFinder output from all 47 species
GSVIVT01020794001 No alias Polygalacturonase OS=Nicotiana tabacum 0.06 OrthoFinder output from all 47 species
GSVIVT01030018001 No alias Polygalacturonase OS=Nicotiana tabacum 0.03 OrthoFinder output from all 47 species
Zm00001e002846_P002 Zm00001e002846 Exopolygalacturonase (Fragment) OS=Platanus acerifolia... 0.03 OrthoFinder output from all 47 species
Zm00001e030526_P001 Zm00001e030526 Exopolygalacturonase (Fragment) OS=Platanus acerifolia... 0.1 OrthoFinder output from all 47 species
Zm00001e030542_P001 Zm00001e030542 Exopolygalacturonase OS=Zea mays (sp|p35338|pglr2_maize... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 79 405
No external refs found!