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  5. LOC_Os06g38520.1

LOC_Os06g38520.1 (LOC_Os06g38520)


Aliases : LOC_Os06g38520

Description : Probable pectate lyase 22 OS=Arabidopsis thaliana (sp|q93z25|ply22_arath : 175.0)


Gene families : OG0000492 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000492_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g38520.1
Cluster HCCA: Cluster_126

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00171p00044290 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.03 OrthoFinder output from all 47 species
Solyc02g087670.3.1 Solyc02g087670 pectate lyase 0.02 OrthoFinder output from all 47 species
Zm00001e024959_P001 AT59, Zm00001e024959 pectate lyase 0.02 OrthoFinder output from all 47 species
Zm00001e029999_P001 Zm00001e029999 pectate lyase 0.06 OrthoFinder output from all 47 species
Zm00001e037311_P001 Zm00001e037311 pectate lyase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA

No InterPro domains available for this sequence

No external refs found!