1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os06g09890.2

LOC_Os06g09890.2 (CID7, LOC_Os06g09890)


Aliases : CID7, LOC_Os06g09890

Description : Polyadenylate-binding protein-interacting protein 7 OS=Arabidopsis thaliana (sp|o64843|cid7_arath : 376.0)


Gene families : OG0002031 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002031_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g09890.2

Target Alias Description ECC score Gene Family Method Actions
AT2G26280 CID7 CTC-interacting domain 7 0.05 OrthoFinder output from all 47 species
Aob_g01999 CID7 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.10G084400.1 CID7, Ceric.10G084400 not classified & original description: pacid=50613596... 0.03 OrthoFinder output from all 47 species
Ceric.15G072500.1 CID7, Ceric.15G072500 not classified & original description: pacid=50640563... 0.03 OrthoFinder output from all 47 species
Ceric.23G027100.1 CID7, Ceric.23G027100 not classified & original description: pacid=50610394... 0.05 OrthoFinder output from all 47 species
Ehy_g01254 CID7 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g04730 CID7 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01035490001 CID7 Polyadenylate-binding protein-interacting protein 7... 0.03 OrthoFinder output from all 47 species
LOC_Os02g53994.1 CID7, LOC_Os02g53994 Polyadenylate-binding protein-interacting protein 7... 0.05 OrthoFinder output from all 47 species
MA_10429553g0010 CID7 Polyadenylate-binding protein-interacting protein 7... 0.02 OrthoFinder output from all 47 species
Pir_g18148 CID7 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g39391 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g38626 CID7 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e000583_P002 CID7, Zm00001e000583 Polyadenylate-binding protein-interacting protein 7... 0.03 OrthoFinder output from all 47 species
Zm00001e030765_P002 CID7, Zm00001e030765 Polyadenylate-binding protein-interacting protein 7... 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR013899 DUF1771 377 440
IPR009818 Ataxin-2_C 24 35
No external refs found!