LOC_Os06g04870.1 (HB4, ATHB-4, ATHB4,...)

Aliases : HB4, ATHB-4, ATHB4, LOC_Os06g04870

Description : transcription factor (HD-ZIP I/II)

Gene families : OG0000538 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000538_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os06g04870.1

Target	Alias	Description	ECC score	Gene Family Method
AT2G22800	HAT9	Homeobox-leucine zipper protein family	0.03	OrthoFinder output from all 47 species
AT4G17460	HAT1	Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein	0.03	OrthoFinder output from all 47 species
AT4G37790	HAT22	Homeobox-leucine zipper protein family	0.03	OrthoFinder output from all 47 species
Adi_g021164	HAT14	HD-ZIP I/II-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Adi_g048337	HB-2, ATHB2, ATHB-2, HAT4	HD-ZIP I/II-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Adi_g081130	HAT2	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Adi_g082135	HAT22	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ala_g14656	HAT3	HD-ZIP I/II-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Als_g06206	HAT14	HD-ZIP I/II-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Als_g21233	HAT14	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Aob_g24193	HAT22	HD-ZIP I/II-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Aop_g28789	HAT14	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Aspi01Gene31702.t1	HAT14, Aspi01Gene31702	HD-ZIP I/II-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Azfi_s0001.g000622	HAT14	HD-ZIP I/II-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Azfi_s0040.g026637	HAT14	HD-ZIP I/II-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Azfi_s0190.g056904	HB-2, ATHB2, ATHB-2, HAT4	HD-ZIP I/II-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Ceric.04G036500.1	HAT14, Ceric.04G036500	HD-ZIP I/II-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
Ceric.15G062900.1	HAT14, Ceric.15G062900	HD-ZIP I/II-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Dac_g10914	HAT3	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Dcu_g14029	HAT14	HD-ZIP I/II-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Dde_g07334	HAT3	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
GSVIVT01009274001	HAT22	RNA biosynthesis.transcriptional activation.HB...	0.04	OrthoFinder output from all 47 species
GSVIVT01011754001	ATHB17, HB17, ATHB-17	RNA biosynthesis.transcriptional activation.HB...	0.03	OrthoFinder output from all 47 species
Gb_12394	HB-2, ATHB2, ATHB-2, HAT4	Homeobox-leucine zipper protein HOX11 OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species
LOC_Os03g12860.1	HAT22, LOC_Os03g12860	transcription factor (HD-ZIP I/II)	0.05	OrthoFinder output from all 47 species
LOC_Os04g46350.1	HB4, ATHB-4,...	transcription factor (HD-ZIP I/II)	0.02	OrthoFinder output from all 47 species
LOC_Os09g27450.1	HAT14, LOC_Os09g27450	transcription factor (HD-ZIP I/II)	0.05	OrthoFinder output from all 47 species
LOC_Os10g41230.1	HB4, ATHB-4,...	transcription factor (HD-ZIP I/II)	0.04	OrthoFinder output from all 47 species
Len_g11143	HAT14	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Len_g11903	HAT14	HD-ZIP I/II-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Lfl_g23099	HAT14	HD-ZIP I/II-type transcription factor & original...	0.04	OrthoFinder output from all 47 species
MA_12174g0010	HAT22	transcription factor (HD-ZIP I/II)	0.05	OrthoFinder output from all 47 species
MA_194299g0010	HAT14	transcription factor (HD-ZIP I/II)	0.02	OrthoFinder output from all 47 species
MA_57689g0010	HAT14	transcription factor (HD-ZIP I/II)	0.03	OrthoFinder output from all 47 species
MA_860238g0010	HB-2, ATHB2, ATHB-2, HAT4	transcription factor (HD-ZIP I/II)	0.05	OrthoFinder output from all 47 species
Msp_g24274	HB4, ATHB-4, ATHB4	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g34025	HAT14	HD-ZIP I/II-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ore_g14537	HAT14	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ore_g22585	HAT2	HD-ZIP I/II-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ore_g32644	HAT14	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Pir_g12061	HAT14	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Pir_g46450	HAT22	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Pnu_g03355	HB-2, ATHB2, ATHB-2, HAT4	HD-ZIP I/II-type transcription factor & original...	0.05	OrthoFinder output from all 47 species
Pnu_g11048	HAT14	HD-ZIP I/II-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Pp3c11_21670V3.1	HB-2, ATHB2,...	homeobox from Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0021.g008373	HAT14	not classified & original description: CDS=1-423	0.06	OrthoFinder output from all 47 species
Sam_g26088	No alias	HD-ZIP I/II-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Solyc02g063520.3.1	HAT22, Solyc02g063520	transcription factor (HD-ZIP I/II)	0.03	OrthoFinder output from all 47 species
Solyc02g091930.3.1	HAT22, Solyc02g091930	transcription factor (HD-ZIP I/II)	0.06	OrthoFinder output from all 47 species
Solyc05g008050.3.1	ATHB17, HB17,...	transcription factor (HD-ZIP I/II)	0.03	OrthoFinder output from all 47 species
Zm00001e000928_P002	HAT22, Zm00001e000928	transcription factor (HD-ZIP I/II)	0.03	OrthoFinder output from all 47 species
Zm00001e003763_P001	HAT14, Zm00001e003763	transcription factor (HD-ZIP I/II)	0.05	OrthoFinder output from all 47 species
Zm00001e009939_P001	HAT14, Zm00001e009939	transcription factor (HD-ZIP I/II)	0.03	OrthoFinder output from all 47 species
Zm00001e020345_P001	ATHB17, HB17,...	transcription factor (HD-ZIP I/II)	0.03	OrthoFinder output from all 47 species
Zm00001e025216_P001	HAT22, Zm00001e025216	transcription factor (HD-ZIP I/II)	0.04	OrthoFinder output from all 47 species
Zm00001e036547_P001	HAT14, Zm00001e036547	transcription factor (HD-ZIP I/II)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004252	serine-type endopeptidase activity	IEP	HCCA
MF	GO:0004857	enzyme inhibitor activity	IEP	HCCA
MF	GO:0030599	pectinesterase activity	IEP	HCCA
BP	GO:0042545	cell wall modification	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	HCCA
BP	GO:0071554	cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071555	cell wall organization	IEP	HCCA
MF	GO:0140678	molecular function inhibitor activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003106	Leu_zip_homeo	170	204
IPR001356	Homeobox_dom	114	168

External Links

No external refs found!

LOC_Os06g04870.1 (HB4, ATHB-4, ATHB4,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation