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  5. LOC_Os06g01680.1

LOC_Os06g01680.1 (LOC_Os06g01680)


Aliases : LOC_Os06g01680

Description : no hits & (original description: none)


Gene families : OG0004547 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004547_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os06g01680.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00261110 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
AT4G01290 No alias unknown protein; FUNCTIONS IN: molecular_function... 0.03 OrthoFinder output from all 47 species
Adi_g039826 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g058856 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g097779 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g19298 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g07010 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g12425 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g18751 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01026955001 No alias No description available 0.07 OrthoFinder output from all 47 species
Lfl_g05009 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Mp8g02270.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Nbi_g10394 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g36600 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g10960 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0044.g013054 No alias not classified & original description: CDS=1-3603 0.03 OrthoFinder output from all 47 species
Sam_g25223 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Smo441701 No alias No description available 0.05 OrthoFinder output from all 47 species
Solyc01g095020.3.1 Solyc01g095020 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Solyc10g012030.4.1 Solyc10g012030 no hits & (original description: none) 0.12 OrthoFinder output from all 47 species
Zm00001e036283_P004 Zm00001e036283 no hits & (original description: none) 0.12 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP HCCA
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0017069 snRNA binding IEP HCCA
MF GO:0017070 U6 snRNA binding IEP HCCA
CC GO:0018995 host cellular component IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0030623 U5 snRNA binding IEP HCCA
CC GO:0033643 host cell part IEP HCCA
CC GO:0033646 host intracellular part IEP HCCA
CC GO:0033647 host intracellular organelle IEP HCCA
CC GO:0033648 host intracellular membrane-bounded organelle IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
CC GO:0042025 host cell nucleus IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!