LOC_Os05g49210.1 (WRKY42, AtWRKY42,...)

Aliases : WRKY42, AtWRKY42, LOC_Os05g49210

Description : transcription factor (WRKY)

Gene families : OG0000020 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os05g49210.1

Target	Alias	Description	ECC score	Gene Family Method
Als_g57885	WRKY43, ATWRKY43	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene46328.t1	ATWRKY13,...	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene67596.t1	WRKY3, Aspi01Gene67596	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g27210	WRKY6, ATWRKY6	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g42568	ATWRKY71, WRKY71	WRKY-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g68595	WRKY6, ATWRKY6	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g10756	WRKY28, ATWRKY28	WRKY-type transcription factor & original description: none	0.09	OrthoFinder output from all 47 species
Dac_g32055	ATWRKY30, WRKY30	WRKY-type transcription factor & original description: none	0.17	OrthoFinder output from all 47 species
GSVIVT01019511001	WRKY53, ATWRKY53	RNA biosynthesis.transcriptional activation.WRKY...	0.01	OrthoFinder output from all 47 species
GSVIVT01027069001	WRKY53, ATWRKY53	RNA biosynthesis.transcriptional activation.WRKY...	0.01	OrthoFinder output from all 47 species
Pir_g57356	WRKY6, ATWRKY6	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0177.g024646	WRKY4	WRKY-type transcription factor & original description: CDS=1-1935	0.02	OrthoFinder output from all 47 species
Zm00001e009708_P001	WRKY53,...	transcription factor (WRKY)	0.09	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003657	WRKY_dom	365	422

External Links

No external refs found!

LOC_Os05g49210.1 (WRKY42, AtWRKY42,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation