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  5. LOC_Os05g46780.1

LOC_Os05g46780.1 (DDL, LOC_Os05g46780)


Aliases : DDL, LOC_Os05g46780

Description : pri-miRNA-DCL1 association factor (DAWDLE)


Gene families : OG0005544 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005544_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g46780.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AT3G20550 DDL SMAD/FHA domain-containing protein 0.03 OrthoFinder output from all 47 species
Azfi_s0301.g063701 DDL pri-miRNA-DCL1 association factor *(DAWDLE) of miRNA... 0.03 OrthoFinder output from all 47 species
Ceric.09G053400.1 DDL, Ceric.09G053400 pri-miRNA-DCL1 association factor *(DAWDLE) of miRNA... 0.03 OrthoFinder output from all 47 species
Cre09.g390430 DDL RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder output from all 47 species
Dac_g16832 DDL pri-miRNA-DCL1 association factor *(DAWDLE) of miRNA... 0.02 OrthoFinder output from all 47 species
Ehy_g13969 DDL pri-miRNA-DCL1 association factor *(DAWDLE) of miRNA... 0.02 OrthoFinder output from all 47 species
GSVIVT01030604001 DDL RNA biosynthesis.RNA polymerase II-dependent... 0.03 OrthoFinder output from all 47 species
Lfl_g04708 DDL pri-miRNA-DCL1 association factor *(DAWDLE) of miRNA... 0.02 OrthoFinder output from all 47 species
Mp7g08770.1 DDL pri-miRNA-DCL1 association factor (DAWDLE) 0.02 OrthoFinder output from all 47 species
Pir_g07028 DDL pri-miRNA-DCL1 association factor *(DAWDLE) of miRNA... 0.04 OrthoFinder output from all 47 species
Sam_g28339 No alias pri-miRNA-DCL1 association factor *(DAWDLE) of miRNA... 0.02 OrthoFinder output from all 47 species
Solyc10g006390.3.1 DDL, Solyc10g006390 pri-miRNA-DCL1 association factor (DAWDLE) 0.07 OrthoFinder output from all 47 species
Spa_g49852 DDL pri-miRNA-DCL1 association factor *(DAWDLE) of miRNA... 0.02 OrthoFinder output from all 47 species
Zm00001e031475_P002 DDL, Zm00001e031475 pri-miRNA-DCL1 association factor (DAWDLE) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
BP GO:0032259 methylation IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000253 FHA_dom 393 473
No external refs found!