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  5. LOC_Os05g46510.1

LOC_Os05g46510.1 (LOC_Os05g46510)


Aliases : LOC_Os05g46510

Description : Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana (sp|q94aj5|pglr5_arath : 381.0) & Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase(50.3.2 : 210.9)


Gene families : OG0000452 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000452_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g46510.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00250890 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.03 OrthoFinder output from all 47 species
AMTR_s00096p00105250 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.03 OrthoFinder output from all 47 species
AT1G10640 No alias Pectin lyase-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT1G80170 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G26610 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT3G57510 ADPG1 Pectin lyase-like superfamily protein 0.02 OrthoFinder output from all 47 species
AT5G14650 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
AT5G17200 No alias Pectin lyase-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g112354 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Als_g51935 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g12304 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene13416.t1 Aspi01Gene13416 EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene44829.t1 Aspi01Gene44829 EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0030.g024436 No alias EC_3.2 glycosylase & original description: CDS=1-1320 0.03 OrthoFinder output from all 47 species
Cba_g14013 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g43003 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g44374 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g09828 No alias EC_3.2 glycosylase & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01017644001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01031298001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01032117001 QRT2 Cell wall.pectin.modification and... 0.03 OrthoFinder output from all 47 species
GSVIVT01032447001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01033362001 ADPG2, PGAZAT Cell wall.pectin.modification and... 0.03 OrthoFinder output from all 47 species
LOC_Os01g44970.1 LOC_Os01g44970 polygalacturonase (PGX1) 0.05 OrthoFinder output from all 47 species
LOC_Os03g59330.1 ADPG2, PGAZAT,... polygalacturonase (QRT2) 0.04 OrthoFinder output from all 47 species
LOC_Os05g46520.1 LOC_Os05g46520 Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
LOC_Os05g50260.1 LOC_Os05g50260 Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Len_g55532 No alias EC_3.2 glycosylase & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g17901 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
MA_10232053g0010 No alias Polygalacturonase OS=Cryptomeria japonica... 0.03 OrthoFinder output from all 47 species
MA_10431579g0010 No alias Polygalacturonase OS=Cryptomeria japonica... 0.03 OrthoFinder output from all 47 species
MA_10862g0010 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
MA_13282g0010 No alias Polygalacturonase OS=Actinidia deliciosa... 0.02 OrthoFinder output from all 47 species
Mp3g21140.1 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Nbi_g11845 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g17999 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g64037 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g001042 No alias EC_3.2 glycosylase & original description: CDS=170-1315 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002755 No alias not classified & original description: CDS=1-783 0.02 OrthoFinder output from all 47 species
Smo111266 ADPG2, PGAZAT Polygalacturonase OS=Chamaecyparis obtusa 0.03 OrthoFinder output from all 47 species
Smo78038 No alias Cell wall.pectin.modification and... 0.05 OrthoFinder output from all 47 species
Solyc03g116580.4.1 Solyc03g116580 Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Solyc08g014560.3.1 Solyc08g014560 Polygalacturonase OS=Prunus persica... 0.03 OrthoFinder output from all 47 species
Solyc10g047590.3.1 Solyc10g047590 Polygalacturonase OS=Gossypium hirsutum... 0.03 OrthoFinder output from all 47 species
Zm00001e006097_P001 ADPG2, PGAZAT,... polygalacturonase (QRT2) 0.05 OrthoFinder output from all 47 species
Zm00001e013553_P001 Zm00001e013553 Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e026160_P001 Zm00001e026160 Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Zm00001e026240_P001 Zm00001e026240 Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Zm00001e027720_P001 Zm00001e027720 Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Zm00001e032294_P001 Zm00001e032294 Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006629 lipid metabolic process IEP HCCA
BP GO:0006631 fatty acid metabolic process IEP HCCA
BP GO:0006633 fatty acid biosynthetic process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 62 394
No external refs found!