LOC_Os05g42250.1 (DND2, CNGC4, HLM1,...)


Aliases : DND2, CNGC4, HLM1, ATCNGC4, LOC_Os05g42250

Description : cyclic nucleotide-gated cation channel (CNGC)


Gene families : OG0000170 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000170_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g42250.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00270020 evm_27.TU.AmTr_v1... External stimuli response.temperature.temperature... 0.03 OrthoFinder output from all 47 species
AT3G17700 ATCNGC20, CNGC20, CNBT1 cyclic nucleotide-binding transporter 1 0.02 OrthoFinder output from all 47 species
AT5G57940 CNGC5, ATCNGC5 cyclic nucleotide gated channel 5 0.03 OrthoFinder output from all 47 species
Ala_g27810 DND1, ATCNGC2, CNGC2 cyclic nucleotide-gated cation channel *(CNGC) &... 0.03 OrthoFinder output from all 47 species
Ala_g33029 DND1, ATCNGC2, CNGC2 cyclic nucleotide-gated cation channel *(CNGC) &... 0.02 OrthoFinder output from all 47 species
Als_g12676 CNGC15, ATCNGC15 cyclic nucleotide-gated cation channel *(CNGC) &... 0.02 OrthoFinder output from all 47 species
Azfi_s0050.g030979 DND1, ATCNGC2, CNGC2 cyclic nucleotide-gated cation channel *(CNGC) &... 0.03 OrthoFinder output from all 47 species
Cba_g13170 DND1, ATCNGC2, CNGC2 temperature sensor protein *(CNGC2) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g02798 ATCNGC9, CNGC9 cyclic nucleotide-gated cation channel *(CNGC) &... 0.02 OrthoFinder output from all 47 species
GSVIVT01007785001 CNGC18, ATCNGC18 Solute transport.channels.VIC superfamily.cyclic... 0.05 OrthoFinder output from all 47 species
GSVIVT01011487001 DND1, ATCNGC2, CNGC2 External stimuli response.temperature.temperature... 0.04 OrthoFinder output from all 47 species
GSVIVT01025208001 CNGC15, ATCNGC15 Solute transport.channels.VIC superfamily.cyclic... 0.02 OrthoFinder output from all 47 species
GSVIVT01029407001 ATCNGC20, CNGC20, CNBT1 Solute transport.channels.VIC superfamily.cyclic... 0.03 OrthoFinder output from all 47 species
LOC_Os06g33600.1 ATCNGC1, CNGC1,... cyclic nucleotide-gated cation channel (CNGC) 0.03 OrthoFinder output from all 47 species
Lfl_g30559 DND2, CNGC4,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Mp3g14660.1 DND2, CNGC4,... cyclic nucleotide-gated cation channel (CNGC) 0.04 OrthoFinder output from all 47 species
Pir_g44975 ATCNGC3, CNGC3, CNGC3.C not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g36093 No alias cyclic nucleotide-gated cation channel *(CNGC) &... 0.02 OrthoFinder output from all 47 species
Smo416791 DND1, ATCNGC2, CNGC2 External stimuli response.temperature.temperature... 0.04 OrthoFinder output from all 47 species
Solyc03g116850.3.1 ATCNGC8, CNGC8,... cyclic nucleotide-gated cation channel (CNGC) 0.04 OrthoFinder output from all 47 species
Solyc06g051920.4.1 ATCNGC1, CNGC1,... cyclic nucleotide-gated cation channel (CNGC) 0.03 OrthoFinder output from all 47 species
Solyc12g005400.3.1 DND2, CNGC4,... cyclic nucleotide-gated cation channel (CNGC) 0.03 OrthoFinder output from all 47 species
Zm00001e006772_P003 CNGC5, ATCNGC5,... cyclic nucleotide-gated cation channel (CNGC) 0.02 OrthoFinder output from all 47 species
Zm00001e012009_P001 DND1, ATCNGC2,... cyclic nucleotide-gated cation channel (CNGC).... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005216 monoatomic ion channel activity IEA Interproscan
BP GO:0006811 monoatomic ion transport IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009733 response to auxin IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
InterPro domains Description Start Stop
IPR005821 Ion_trans_dom 182 421
IPR000595 cNMP-bd_dom 516 567
No external refs found!