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  5. LOC_Os05g31220.1

LOC_Os05g31220.1 (CDC48B, LOC_Os05g31220)


Aliases : CDC48B, LOC_Os05g31220

Description : Cell division control protein 48 homolog B OS=Arabidopsis thaliana (sp|q9zpr1|cd48b_arath : 427.0)


Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g31220.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00095p00091650 CIP111,... No description available 0.02 OrthoFinder output from all 47 species
Ceric.16G049300.1 CDC48B, Ceric.16G049300 platform ATPase CDC48 & original description:... 0.03 OrthoFinder output from all 47 species
Dde_g02340 No alias platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g09095 CDC48B platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
MA_10427366g0010 CDC48B Cell division control protein 48 homolog B... 0.03 OrthoFinder output from all 47 species
Mp1g25630.1 No alias platform ATPase (CDC48) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
MF GO:0010333 terpene synthase activity IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1990380 K48-linked deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR041569 AAA_lid_3 64 97
IPR003959 ATPase_AAA_core 175 310
No external refs found!