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  5. LOC_Os05g28510.4

LOC_Os05g28510.4 (LOC_Os05g28510)


Aliases : LOC_Os05g28510

Description : IMB1 nucleocytoplasmic import karyopherin


Gene families : OG0001300 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001300_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g28510.4
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00058p00157820 evm_27.TU.AmTr_v1... Protein translocation.nucleus.nucleocytoplasmic... 0.03 OrthoFinder output from all 47 species
AMTR_s00252p00011130 evm_27.TU.AmTr_v1... Protein translocation.nucleus.nucleocytoplasmic... 0.02 OrthoFinder output from all 47 species
AT3G08943 No alias ARM repeat superfamily protein 0.08 OrthoFinder output from all 47 species
Adi_g102316 No alias nucleocytoplasmic import karyopherin *(IMB1) & original... 0.04 OrthoFinder output from all 47 species
Adi_g102317 No alias nucleocytoplasmic import karyopherin *(IMB1) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0049.g030935 No alias nucleocytoplasmic import karyopherin *(IMB1) & original... 0.03 OrthoFinder output from all 47 species
Cba_g02724 No alias nucleocytoplasmic import karyopherin *(IMB1) & original... 0.03 OrthoFinder output from all 47 species
Ceric.10G004800.1 Ceric.10G004800 nucleocytoplasmic import karyopherin *(IMB1) & original... 0.03 OrthoFinder output from all 47 species
Cre01.g034000 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.07 OrthoFinder output from all 47 species
Dac_g07112 No alias nucleocytoplasmic import karyopherin *(IMB1) & original... 0.03 OrthoFinder output from all 47 species
Gb_36673 No alias IMB1 nucleocytoplasmic import karyopherin 0.07 OrthoFinder output from all 47 species
LOC_Os12g38110.1 LOC_Os12g38110 IMB1 nucleocytoplasmic import karyopherin 0.02 OrthoFinder output from all 47 species
Len_g02910 No alias nucleocytoplasmic import karyopherin *(IMB1) & original... 0.02 OrthoFinder output from all 47 species
MA_34778g0010 No alias IMB1 nucleocytoplasmic import karyopherin 0.04 OrthoFinder output from all 47 species
Ore_g30274 No alias nucleocytoplasmic import karyopherin *(IMB1) & original... 0.03 OrthoFinder output from all 47 species
Pir_g13609 No alias nucleocytoplasmic import karyopherin *(IMB1) & original... 0.02 OrthoFinder output from all 47 species
Ppi_g16481 No alias nucleocytoplasmic import karyopherin *(IMB1) & original... 0.02 OrthoFinder output from all 47 species
Sam_g12426 No alias nucleocytoplasmic import karyopherin *(IMB1) & original... 0.02 OrthoFinder output from all 47 species
Sam_g52654 No alias nucleocytoplasmic import karyopherin *(IMB1) & original... 0.02 OrthoFinder output from all 47 species
Smo124593 No alias Protein translocation.nucleus.nucleocytoplasmic... 0.05 OrthoFinder output from all 47 species
Zm00001e018172_P001 Zm00001e018172 IMB1 nucleocytoplasmic import karyopherin 0.02 OrthoFinder output from all 47 species
Zm00001e031516_P001 Zm00001e031516 IMB1 nucleocytoplasmic import karyopherin 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006886 intracellular protein transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006952 defense response IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001494 Importin-beta_N 21 101
No external refs found!