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  5. LOC_Os05g06450.1

LOC_Os05g06450.1 (TUBG1, LOC_Os05g06450)


Aliases : TUBG1, LOC_Os05g06450

Description : gamma tubulin component TUG1 of gamma-Tubulin ring complex (gamma-TuRC)


Gene families : OG0003561 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003561_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g06450.1

Target Alias Description ECC score Gene Family Method Actions
AT3G61650 TUBG1 gamma-tubulin 0.03 OrthoFinder output from all 47 species
Ala_g01783 TUBG1 gamma tubulin component *(TUG1) of gamma-Tubulin ring... 0.03 OrthoFinder output from all 47 species
Aop_g07894 TUBG1 gamma tubulin component *(TUG1) of gamma-Tubulin ring... 0.04 OrthoFinder output from all 47 species
Azfi_s0003.g007580 TUBG1 gamma tubulin component *(TUG1) of gamma-Tubulin ring... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000093.121 TUBG1 Tubulin gamma chain OS=Physcomitrella patens subsp. patens 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000093.122 TUBG2, ATGCP2, GCP2 Tubulin gamma chain OS=Physcomitrella patens subsp. patens 0.01 OrthoFinder output from all 47 species
Cre06.g299300 TUBG1 Cytoskeleton.microtubular network.microtubule Tubulin... 0.03 OrthoFinder output from all 47 species
Dcu_g19688 TUBG1 gamma tubulin component *(TUG1) of gamma-Tubulin ring... 0.02 OrthoFinder output from all 47 species
Ehy_g06888 TUBG1 gamma tubulin component *(TUG1) of gamma-Tubulin ring... 0.02 OrthoFinder output from all 47 species
GSVIVT01027050001 TUBG1 Cytoskeleton.microtubular network.microtubule Tubulin... 0.07 OrthoFinder output from all 47 species
Gb_39659 TUBG2, ATGCP2, GCP2 Tubulin gamma chain OS=Physcomitrella patens subsp.... 0.05 OrthoFinder output from all 47 species
Len_g01240 TUBG1 gamma tubulin component *(TUG1) of gamma-Tubulin ring... 0.02 OrthoFinder output from all 47 species
Mp7g00700.1 TUBG1 gamma tubulin component TUG1 of gamma-Tubulin ring... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006694 steroid biosynthetic process IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007051 spindle organization IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0008202 steroid metabolic process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016229 steroid dehydrogenase activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP HCCA
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
BP GO:0051225 spindle assembly IEP HCCA
BP GO:0055114 obsolete oxidation-reduction process IEP HCCA
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP HCCA
CC GO:0070652 HAUS complex IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0140694 non-membrane-bounded organelle assembly IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR018316 Tubulin/FtsZ_2-layer-sand-dom 264 393
IPR003008 Tubulin_FtsZ_GTPase 4 214
No external refs found!