1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os05g06260.1

LOC_Os05g06260.1 (ATGCP4, GCP4, LOC_Os05g06260)


Aliases : ATGCP4, GCP4, LOC_Os05g06260

Description : component GCP4 of gamma-Tubulin ring complex (gamma-TuRC)


Gene families : OG0005059 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005059_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os05g06260.1
Cluster HCCA: Cluster_170

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00111p00141410 ATGCP4, GCP4,... Cytoskeleton.microtubular network.microtubule Tubulin... 0.03 OrthoFinder output from all 47 species
AT3G53760 ATGCP4, GCP4 GAMMA-TUBULIN COMPLEX PROTEIN 4 0.03 OrthoFinder output from all 47 species
Aob_g14023 ATGCP4, GCP4 component *(GCP4) of gamma-Tubulin ring complex &... 0.02 OrthoFinder output from all 47 species
Cba_g01249 ATGCP4, GCP4 component *(GCP4) of gamma-Tubulin ring complex &... 0.02 OrthoFinder output from all 47 species
Gb_14684 ATGCP4, GCP4 component GCP4 of gamma-Tubulin ring complex (gamma-TuRC) 0.02 OrthoFinder output from all 47 species
Mp7g15510.1 ATGCP4, GCP4 component GCP4 of gamma-Tubulin ring complex (gamma-TuRC) 0.02 OrthoFinder output from all 47 species
Solyc09g075190.3.1 ATGCP4, GCP4,... component GCP4 of gamma-Tubulin ring complex (gamma-TuRC) 0.03 OrthoFinder output from all 47 species
Tin_g12979 ATGCP4, GCP4 component *(GCP4) of gamma-Tubulin ring complex &... 0.03 OrthoFinder output from all 47 species
Zm00001e031144_P001 ATGCP4, GCP4,... component GCP4 of gamma-Tubulin ring complex (gamma-TuRC) 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0043015 gamma-tubulin binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP HCCA
BP GO:0000226 microtubule cytoskeleton organization IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006694 steroid biosynthetic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007051 spindle organization IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008202 steroid metabolic process IEP HCCA
BP GO:0009966 regulation of signal transduction IEP HCCA
BP GO:0010498 proteasomal protein catabolic process IEP HCCA
BP GO:0010646 regulation of cell communication IEP HCCA
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP HCCA
BP GO:0015780 nucleotide-sugar transmembrane transport IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016229 steroid dehydrogenase activity IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0023051 regulation of signaling IEP HCCA
BP GO:0030163 protein catabolic process IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0032012 regulation of ARF protein signal transduction IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0046578 regulation of Ras protein signal transduction IEP HCCA
BP GO:0048583 regulation of response to stimulus IEP HCCA
MF GO:0051011 microtubule minus-end binding IEP HCCA
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP HCCA
BP GO:0051225 spindle assembly IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
CC GO:0070652 HAUS complex IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
BP GO:0140694 non-membrane-bounded organelle assembly IEP HCCA
BP GO:1901264 carbohydrate derivative transport IEP HCCA
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1902531 regulation of intracellular signal transduction IEP HCCA
InterPro domains Description Start Stop
IPR040457 GCP_C 404 730
IPR041470 GCP_N 2 399
No external refs found!