LOC_Os04g54474.1 (OBF4, TGA4, LOC_Os04g54474)

Aliases : OBF4, TGA4, LOC_Os04g54474

Description : transcription factor (bZIP). transcription factor (TGA)

Gene families : OG0000342 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000342_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os04g54474.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00030830	TGA2, AHBP-1B,...	RNA biosynthesis.transcriptional activation.bZIP...	0.03	OrthoFinder output from all 47 species
AMTR_s00010p00231750	OBF4, TGA4,...	RNA biosynthesis.transcriptional activation.bZIP...	0.06	OrthoFinder output from all 47 species
AMTR_s00031p00017860	bZIP21, TGA9,...	RNA biosynthesis.transcriptional activation.bZIP...	0.03	OrthoFinder output from all 47 species
AT1G08320	bZIP21, TGA9	bZIP transcription factor family protein	0.05	OrthoFinder output from all 47 species
AT5G06839	TGA10, bZIP65	bZIP transcription factor family protein	0.04	OrthoFinder output from all 47 species
AT5G06960	TGA5, OBF5	OCS-element binding factor 5	0.03	OrthoFinder output from all 47 species
Aev_g07855	TGA2, AHBP-1B	NPR1-interactive transcription factor *(TGA) & original...	0.05	OrthoFinder output from all 47 species
Aop_g61197	TGA2, AHBP-1B	NPR1-interactive transcription factor *(TGA) & original...	0.02	OrthoFinder output from all 47 species
Cba_g03904	TGA2, AHBP-1B	NPR1-interactive transcription factor *(TGA) & original...	0.03	OrthoFinder output from all 47 species
Ehy_g04779	TGA2, AHBP-1B	TGA-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g10259	TGA2, AHBP-1B	NPR1-interactive transcription factor *(TGA) & original...	0.02	OrthoFinder output from all 47 species
Ehy_g12971	TGA2, AHBP-1B	NPR1-interactive transcription factor *(TGA) & original...	0.02	OrthoFinder output from all 47 species
Ehy_g26684	TGA2, AHBP-1B	TGA-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01033531001	TGA10, bZIP65	RNA biosynthesis.transcriptional activation.bZIP...	0.03	OrthoFinder output from all 47 species
GSVIVT01036134001	bZIP21, TGA9	RNA biosynthesis.transcriptional activation.bZIP...	0.03	OrthoFinder output from all 47 species
LOC_Os02g10150.1	bZIP21, TGA9,...	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Pnu_g09909	TGA2, AHBP-1B	NPR1-interactive transcription factor *(TGA) & original...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0012.g005385	TGA2, AHBP-1B	TGA-type transcription factor & original description:...	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0051.g013911	TGA2, AHBP-1B	TGA-type transcription factor & original description: CDS=62-1078	0.02	OrthoFinder output from all 47 species
Sam_g29366	No alias	NPR1-interactive transcription factor *(TGA) & original...	0.02	OrthoFinder output from all 47 species
Solyc04g072460.3.1	TGA1, Solyc04g072460	transcription factor (bZIP). transcription factor (TGA)	0.03	OrthoFinder output from all 47 species
Solyc05g009660.4.1	PAN, Solyc05g009660	transcription factor (bZIP). transcription factor (TGA)....	0.03	OrthoFinder output from all 47 species
Solyc06g074320.3.1	bZIP21, TGA9,...	transcription factor (bZIP). transcription factor (TGA)	0.09	OrthoFinder output from all 47 species
Spa_g55743	TGA2, AHBP-1B	TGA-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g05069	TGA2, AHBP-1B	TGA-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e006810_P004	OBF4, TGA4,...	transcription factor (bZIP). transcription factor (TGA)	0.04	OrthoFinder output from all 47 species
Zm00001e010066_P001	TGA10, bZIP65,...	transcription factor (bZIP). transcription factor (TGA)	0.03	OrthoFinder output from all 47 species
Zm00001e019207_P002	bZIP21, TGA9,...	transcription factor (bZIP). transcription factor (TGA)	0.05	OrthoFinder output from all 47 species
Zm00001e024141_P002	bZIP21, TGA9,...	transcription factor (bZIP). transcription factor (TGA)	0.04	OrthoFinder output from all 47 species
Zm00001e031761_P001	bZIP21, TGA9,...	transcription factor (bZIP). transcription factor (TGA)	0.06	OrthoFinder output from all 47 species
Zm00001e037595_P002	TGA10, bZIP65,...	transcription factor (bZIP). transcription factor (TGA)	0.03	OrthoFinder output from all 47 species
Zm00001e039891_P001	Zm00001e039891	transcription factor (bZIP). transcription factor (TGA)	0.05	OrthoFinder output from all 47 species
Zm00001e041747_P002	TGA1, Zm00001e041747	transcription factor (bZIP)	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000160	phosphorelay signal transduction system	IEP	HCCA
BP	GO:0007165	signal transduction	IEP	HCCA
MF	GO:0009055	electron transfer activity	IEP	HCCA
BP	GO:0035556	intracellular signal transduction	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR025422	TGA_domain	194	270
IPR004827	bZIP	104	144

External Links

No external refs found!

LOC_Os04g54474.1 (OBF4, TGA4, LOC_Os04g54474)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation