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  5. LOC_Os04g53620.1

LOC_Os04g53620.1 (UBQ4, LOC_Os04g53620)


Aliases : UBQ4, LOC_Os04g53620

Description : ubiquitin-fold protein (UBQ)


Gene families : OG0000054 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g53620.1

Target Alias Description ECC score Gene Family Method Actions
AT4G05050 UBQ11 ubiquitin 11 0.03 OrthoFinder output from all 47 species
Ala_g27780 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Als_g46335 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Als_g58521 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g10329 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Aob_g11689 UBQ4 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene16403.t1 UBQ10, Aspi01Gene16403 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene18514.t1 UBQ11, Aspi01Gene18514 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene18515.t1 UBQ11, Aspi01Gene18515 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene18517.t1 UBQ11, Aspi01Gene18517 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene23078.t1 UBQ4, Aspi01Gene23078 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene23079.t1 UBQ4, Aspi01Gene23079 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene57837.t1 UBQ10, Aspi01Gene57837 UBQ ubiquitin-fold protein & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g29654 UBQ14 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g34959 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g37486 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 47 species
Cba_g77311 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g79067 UBQ11 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cre01.g007051 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.01 OrthoFinder output from all 47 species
Cre07.g322100 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g39435 UBQ14 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g45001 UBQ14 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g07346 RUB1, ATRUB1, NEDD8 RUB ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g48343 UBQ14 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g16348 UBQ14 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g28640 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g50341 UBQ14 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Gb_28253 UBQ11 ubiquitin-fold protein (UBQ) 0.02 OrthoFinder output from all 47 species
Lfl_g16683 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g19694 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Mp4g02740.1 UBQ10 ubiquitin-fold protein (UBQ) 0.03 OrthoFinder output from all 47 species
Msp_g17970 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g14434 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g32858 No alias component *(eS31) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Pnu_g26810 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g21095 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g25580 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g55284 UBQ4 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g26881 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Smo271198 UBQ4 Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
Solyc06g053210.4.1 Solyc06g053210 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Spa_g12172 RUB1, ATRUB1, NEDD8 RUB ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g17741 UBQ11 UBQ ubiquiTin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e009126_P001 UBQ11, Zm00001e009126 Polyubiquitin (Fragment) OS=Acetabularia peniculus... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0004143 diacylglycerol kinase activity IEP HCCA
MF GO:0005047 signal recognition particle binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005785 signal recognition particle receptor complex IEP HCCA
BP GO:0006605 protein targeting IEP HCCA
BP GO:0006612 protein targeting to membrane IEP HCCA
BP GO:0006613 cotranslational protein targeting to membrane IEP HCCA
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0007186 G protein-coupled receptor signaling pathway IEP HCCA
BP GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
MF GO:0043021 ribonucleoprotein complex binding IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0045047 protein targeting to ER IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0051668 localization within membrane IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0070972 protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP HCCA
BP GO:0072657 protein localization to membrane IEP HCCA
BP GO:0090150 establishment of protein localization to membrane IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR000626 Ubiquitin-like_dom 318 389
IPR000626 Ubiquitin-like_dom 90 161
IPR000626 Ubiquitin-like_dom 242 313
IPR000626 Ubiquitin-like_dom 166 237
IPR000626 Ubiquitin-like_dom 14 85
No external refs found!