LOC_Os04g46060.1 (LOC_Os04g46060)

Aliases : LOC_Os04g46060

Description : transcription factor (WRKY)

Gene families : OG0000020 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os04g46060.1
Cluster	HCCA: Cluster_178

Target	Alias	Description	ECC score	Gene Family Method
AT1G80590	WRKY66, ATWRKY66	WRKY DNA-binding protein 66	0.03	OrthoFinder output from all 47 species
AT2G03340	WRKY3	WRKY DNA-binding protein 3	0.04	OrthoFinder output from all 47 species
AT4G39410	ATWRKY13, WRKY13	WRKY DNA-binding protein 13	0.04	OrthoFinder output from all 47 species
AT5G64810	ATWRKY51, WRKY51	WRKY DNA-binding protein 51	0.03	OrthoFinder output from all 47 species
Aev_g03326	WRKY28, ATWRKY28	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g08291	WRKY42, AtWRKY42	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g00644	ATWRKY71, WRKY71	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g20798	ATWRKY45, WRKY45	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene06724.t1	ATWRKY58,...	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene23582.t1	ATWRKY71,...	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene30007.t1	ATWRKY45,...	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene46328.t1	ATWRKY13,...	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene52920.t1	ATWRKY71,...	WRKY-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g01943	WRKY28, ATWRKY28	WRKY-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Dac_g28011	ATWRKY30, WRKY30	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g16660	WRKY6, ATWRKY6	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g23435	ATWRKY45, WRKY45	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g26902	WRKY31, ATWRKY31	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01011356001	WRKY72, ATWRKY72	RNA biosynthesis.transcriptional activation.WRKY...	0.03	OrthoFinder output from all 47 species
Gb_02351	WRKY42, AtWRKY42	transcription factor (WRKY)	0.03	OrthoFinder output from all 47 species
Gb_20926	WRKY4	transcription factor (WRKY)	0.04	OrthoFinder output from all 47 species
LOC_Os06g05380.1	WRKY72,...	transcription factor (WRKY)	0.05	OrthoFinder output from all 47 species
Len_g46515	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
MA_101135g0010	No alias	transcription factor (WRKY)	0.02	OrthoFinder output from all 47 species
MA_381058g0010	WRKY18, ATWRKY18	transcription factor (WRKY)	0.03	OrthoFinder output from all 47 species
Msp_g19074	ATWRKY51, WRKY51	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g16460	WRKY3	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g19872	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g16309	WRKY28, ATWRKY28	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g27505	WRKY4	WRKY-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Ppi_g08423	WRKY3	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g22478	No alias	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g28344	No alias	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g32808	No alias	WRKY-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Solyc01g058540.3.1	WRKY48,...	transcription factor (WRKY)	0.03	OrthoFinder output from all 47 species
Solyc04g051540.3.1	ATWRKY13,...	transcription factor (WRKY)	0.03	OrthoFinder output from all 47 species
Solyc07g066220.3.1	WRKY2, ATWRKY2,...	transcription factor (WRKY)	0.05	OrthoFinder output from all 47 species
Solyc10g084380.1.1	WRKY4, Solyc10g084380	transcription factor (WRKY)	0.03	OrthoFinder output from all 47 species
Solyc12g011200.3.1	WRKY28,...	transcription factor (WRKY)	0.04	OrthoFinder output from all 47 species
Spa_g12510	AtWRKY20, WRKY20	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g15879	ATWRKY24, WRKY24	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g16962	WRKY4	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g22896	ABO3, WRKY63, ATWRKY63	WRKY-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e007834_P002	WRKY2, ATWRKY2,...	transcription factor (WRKY)	0.03	OrthoFinder output from all 47 species
Zm00001e016669_P001	ATWRKY13,...	transcription factor (WRKY)	0.05	OrthoFinder output from all 47 species
Zm00001e018502_P001	WRKY49,...	transcription factor (WRKY)	0.02	OrthoFinder output from all 47 species
Zm00001e040032_P002	WRKY44, TTG2,...	transcription factor (WRKY)	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003657	WRKY_dom	170	226

External Links

No external refs found!

LOC_Os04g46060.1 (LOC_Os04g46060)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation