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  5. LOC_Os04g43140.1

LOC_Os04g43140.1 (LOC_Os04g43140)


Aliases : LOC_Os04g43140

Description : DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa subsp. japonica (sp|a3avh5|rh13_orysj : 1310.0)


Gene families : OG0005853 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005853_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g43140.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00095p00139840 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.02 OrthoFinder output from all 47 species
AT3G16840 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 OrthoFinder output from all 47 species
Adi_g110755 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g25755 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0123.g048442 No alias not classified & original description: CDS=180-2516 0.02 OrthoFinder output from all 47 species
Ceric.13G087700.1 Ceric.13G087700 not classified & original description: pacid=50636878... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020943.85 No alias DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa... 0.1 OrthoFinder output from all 47 species
Cre01.g022350 No alias DEAD-box ATP-dependent RNA helicase 13 OS=Arabidopsis thaliana 0.12 OrthoFinder output from all 47 species
Dcu_g01929 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01027957001 No alias DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa... 0.08 OrthoFinder output from all 47 species
Gb_06963 No alias DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
Mp5g03860.1 No alias DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
Solyc09g090740.4.1 Solyc09g090740 DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa... 0.11 OrthoFinder output from all 47 species
Zm00001e007582_P001 Zm00001e007582 DEAD-box ATP-dependent RNA helicase 13 OS=Oryza sativa... 0.13 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 496 604
IPR011545 DEAD/DEAH_box_helicase_dom 222 430
No external refs found!