LOC_Os04g42500.1 (LOC_Os04g42500)

Aliases : LOC_Os04g42500

Description : component TRAPPC2/TRS20 of TRAPP complex

Gene families : OG0006734 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006734_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os04g42500.1

Target	Alias	Description	ECC score	Gene Family Method
Cre13.g571600	No alias	No description available	0.01	OrthoFinder output from all 47 species
Lfl_g00243	No alias	component *(TRAPPC2/TRS20) of TRAPP complex & original...	0.03	OrthoFinder output from all 47 species
Solyc06g068030.3.1	Solyc06g068030	component TRAPPC2/TRS20 of TRAPP complex	0.04	OrthoFinder output from all 47 species
Tin_g01490	No alias	component *(TRAPPC2/TRS20) of TRAPP complex & original...	0.03	OrthoFinder output from all 47 species
Zm00001e010997_P001	Zm00001e010997	component TRAPPC2/TRS20 of TRAPP complex	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006810	transport	None	Extended
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016192	vesicle-mediated transport	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0048193	Golgi vesicle transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004615	phosphomannomutase activity	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
BP	GO:0009225	nucleotide-sugar metabolic process	IEP	HCCA
BP	GO:0009226	nucleotide-sugar biosynthetic process	IEP	HCCA
BP	GO:0009298	GDP-mannose biosynthetic process	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA
MF	GO:0016868	intramolecular transferase activity, phosphotransferases	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0019673	GDP-mannose metabolic process	IEP	HCCA
CC	GO:0030008	TRAPP complex	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0045048	protein insertion into ER membrane	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0051205	protein insertion into membrane	IEP	HCCA
BP	GO:0051668	localization within membrane	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071816	tail-anchored membrane protein insertion into ER membrane	IEP	HCCA
BP	GO:0072657	protein localization to membrane	IEP	HCCA
BP	GO:0090150	establishment of protein localization to membrane	IEP	HCCA
CC	GO:0099023	vesicle tethering complex	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006722	Sedlin	9	142

External Links

No external refs found!

LOC_Os04g42500.1 (LOC_Os04g42500)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation