LOC_Os04g41620.1 (ATEP3, EP3, CHIV,...)

Aliases : ATEP3, EP3, CHIV, ATCHITIV, LOC_Os04g41620

Description : Chitinase 4 OS=Oryza sativa subsp. japonica (sp|o04138|chi4_orysj : 418.0)

Gene families : OG0000280 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000280_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os04g41620.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00243300	HCHIB, B-CHI,...	Endochitinase A2 OS=Pisum sativum	0.04	OrthoFinder output from all 47 species
AMTR_s00001p00243570	HCHIB, B-CHI,...	Basic 30 kDa endochitinase OS=Solanum lycopersicum	0.03	OrthoFinder output from all 47 species
AMTR_s00001p00243680	HCHIB, B-CHI,...	Chitinase 3 OS=Oryza sativa subsp. japonica	0.04	OrthoFinder output from all 47 species
AMTR_s00066p00199730	ATEP3, EP3,...	Endochitinase EP3 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
AMTR_s00079p00183520	evm_27.TU.AmTr_v1...	Basic endochitinase OS=Vitis vinifera	0.04	OrthoFinder output from all 47 species
AT2G43570	CHI	chitinase, putative	0.03	OrthoFinder output from all 47 species
AT2G43590	No alias	Chitinase family protein	0.03	OrthoFinder output from all 47 species
AT2G43600	No alias	Chitinase family protein	0.04	OrthoFinder output from all 47 species
AT2G43610	No alias	Chitinase family protein	0.04	OrthoFinder output from all 47 species
Aev_g04564	HCHIB, B-CHI,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g06392	HCHIB, B-CHI,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aev_g16347	HCHIB, B-CHI,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g37269	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Als_g44515	HCHIB, B-CHI,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene32076.t1	ATEP3, EP3,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene32079.t1	ATEP3, EP3,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene32082.t1	ATEP3, EP3,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene32098.t1	HCHIB, B-CHI,...	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Ehy_g04424	HCHIB, B-CHI,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01007190001	HCHIB, B-CHI,...	Basic endochitinase OS=Vitis vinifera	0.07	OrthoFinder output from all 47 species
GSVIVT01007191001	No alias	No description available	0.02	OrthoFinder output from all 47 species
GSVIVT01028243001	No alias	Chitinase 10 OS=Oryza sativa subsp. japonica	0.04	OrthoFinder output from all 47 species
GSVIVT01038108001	ATEP3, EP3,...	Endochitinase EP3 OS=Arabidopsis thaliana	0.05	OrthoFinder output from all 47 species
GSVIVT01038111001	ATEP3, EP3,...	Endochitinase EP3 OS=Arabidopsis thaliana	0.06	OrthoFinder output from all 47 species
GSVIVT01038113001	ATEP3, EP3,...	Endochitinase EP3 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
GSVIVT01038114001	ATEP3, EP3,...	Endochitinase EP3 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
GSVIVT01038116001	ATEP3, EP3,...	Endochitinase EP3 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
GSVIVT01038117001	ATEP3, EP3,...	Endochitinase EP3 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
GSVIVT01038120001	ATEP3, EP3,...	Endochitinase EP3 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Gb_03376	No alias	Chitinase 10 OS=Oryza sativa subsp. japonica...	0.04	OrthoFinder output from all 47 species
Gb_07463	No alias	Chitinase 4 OS=Oryza sativa subsp. japonica...	0.03	OrthoFinder output from all 47 species
Gb_07464	No alias	Chitinase 4 OS=Oryza sativa subsp. japonica...	0.02	OrthoFinder output from all 47 species
Gb_07465	No alias	Chitinase 4 OS=Oryza sativa subsp. japonica...	0.04	OrthoFinder output from all 47 species
Gb_20766	No alias	Chitinase 5 OS=Oryza sativa subsp. japonica...	0.06	OrthoFinder output from all 47 species
Gb_20767	No alias	Chitinase 5 OS=Oryza sativa subsp. japonica...	0.03	OrthoFinder output from all 47 species
Gb_29991	No alias	Chitinase 5 OS=Oryza sativa subsp. japonica...	0.04	OrthoFinder output from all 47 species
Gb_29992	No alias	Chitinase 5 OS=Oryza sativa subsp. japonica...	0.04	OrthoFinder output from all 47 species
Gb_29993	No alias	Chitinase 5 OS=Oryza sativa subsp. japonica...	0.03	OrthoFinder output from all 47 species
Gb_29994	No alias	Endochitinase A OS=Zea mays (sp\|p29022\|chia_maize : 88.6)	0.03	OrthoFinder output from all 47 species
Gb_34557	No alias	Chitinase 6 OS=Oryza sativa subsp. japonica...	0.03	OrthoFinder output from all 47 species
Gb_34558	ATEP3, EP3,...	Chitinase 6 OS=Oryza sativa subsp. japonica...	0.04	OrthoFinder output from all 47 species
LOC_Os02g39330.1	ATEP3, EP3,...	Chitinase 6 OS=Oryza sativa subsp. japonica...	0.03	OrthoFinder output from all 47 species
LOC_Os05g04690.1	LOC_Os05g04690	Chitinase 10 OS=Oryza sativa subsp. japonica...	0.03	OrthoFinder output from all 47 species
LOC_Os05g33140.1	HCHIB, B-CHI,...	Chitinase 9 OS=Oryza sativa subsp. japonica...	0.04	OrthoFinder output from all 47 species
Lfl_g09360	HCHIB, B-CHI,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g25481	ATEP3, EP3,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
MA_10313114g0010	HCHIB, B-CHI,...	Endochitinase B OS=Nicotiana tabacum...	0.04	OrthoFinder output from all 47 species
MA_114934g0010	ATEP3, EP3,...	Chitinase 4 OS=Oryza sativa subsp. japonica...	0.04	OrthoFinder output from all 47 species
MA_170598g0010	No alias	Chitinase 4 OS=Oryza sativa subsp. japonica...	0.04	OrthoFinder output from all 47 species
MA_44734g0010	ATEP3, EP3,...	Chitinase 4 OS=Oryza sativa subsp. japonica...	0.03	OrthoFinder output from all 47 species
MA_448160g0010	ATEP3, EP3,...	Chitinase 5 OS=Oryza sativa subsp. japonica...	0.02	OrthoFinder output from all 47 species
MA_530083g0010	HCHIB, B-CHI,...	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
MA_741127g0010	No alias	Endochitinase At2g43610 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
Mp2g21810.1	HCHIB, B-CHI,...	Chitinase 1 OS=Oryza sativa subsp. japonica...	0.03	OrthoFinder output from all 47 species
Mp2g24440.1	HCHIB, B-CHI,...	Endochitinase CH25 OS=Brassica napus...	0.05	OrthoFinder output from all 47 species
Mp4g01780.1	HCHIB, B-CHI,...	Endochitinase CH5B OS=Phaseolus vulgaris...	0.02	OrthoFinder output from all 47 species
Nbi_g23741	ATEP3, EP3,...	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g30042	ATEP3, EP3,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g32706	HCHIB, B-CHI,...	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Pp3c6_130V3.1	HCHIB, B-CHI,...	basic chitinase	0.01	OrthoFinder output from all 47 species
Ppi_g57704	HCHIB, B-CHI,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g60891	HCHIB, B-CHI,...	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0023.g008764	ATEP3, EP3,...	not classified & original description: CDS=1-579	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0247.g026716	ATEP3, EP3,...	not classified & original description: CDS=1-465	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0247.g026718	ATEP3, EP3,...	not classified & original description: CDS=1-798	0.04	OrthoFinder output from all 47 species
Smo426710	No alias	Endochitinase A OS=Zea mays	0.05	OrthoFinder output from all 47 species
Smo446851	HCHIB, B-CHI,...	Endochitinase A2 OS=Pisum sativum	0.05	OrthoFinder output from all 47 species
Solyc02g061770.4.1	HCHIB, B-CHI,...	Basic endochitinase (Fragment) OS=Solanum lycopersicum...	0.04	OrthoFinder output from all 47 species
Solyc02g082920.4.1	HCHIB, B-CHI,...	Acidic 26 kDa endochitinase OS=Solanum lycopersicum...	0.07	OrthoFinder output from all 47 species
Solyc02g082930.3.1	HCHIB, B-CHI,...	Acidic 27 kDa endochitinase OS=Solanum lycopersicum...	0.06	OrthoFinder output from all 47 species
Solyc02g082960.3.1	HCHIB, B-CHI,...	Basic endochitinase (Fragment) OS=Solanum lycopersicum...	0.03	OrthoFinder output from all 47 species
Solyc07g009510.1.1	HEL, PR4, PR-4,...	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Solyc07g009530.1.1	HCHIB, B-CHI,...	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Solyc10g055800.2.1	HCHIB, B-CHI,...	Basic 30 kDa endochitinase OS=Solanum lycopersicum...	0.03	OrthoFinder output from all 47 species
Solyc10g055810.2.1	HCHIB, B-CHI,...	Basic 30 kDa endochitinase OS=Solanum lycopersicum...	0.08	OrthoFinder output from all 47 species
Solyc10g055820.3.1	HCHIB, B-CHI,...	Basic 30 kDa endochitinase OS=Solanum lycopersicum...	0.1	OrthoFinder output from all 47 species
Solyc10g074390.1.1	HCHIB, B-CHI,...	Endochitinase A OS=Nicotiana tabacum...	0.03	OrthoFinder output from all 47 species
Solyc10g074440.2.1	HCHIB, B-CHI,...	Endochitinase OS=Solanum tuberosum (sp\|p05315\|chit_soltu : 491.0)	0.03	OrthoFinder output from all 47 species
Spa_g08849	ATEP3, EP3,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e002252_P001	HCHIB, B-CHI,...	Chitinase 8 OS=Oryza sativa subsp. japonica...	0.02	OrthoFinder output from all 47 species
Zm00001e027534_P001	Zm00001e027534	Chitinase 10 OS=Oryza sativa subsp. japonica...	0.05	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004568	chitinase activity	IEA	Interproscan
BP	GO:0006022	aminoglycan metabolic process	None	Extended
BP	GO:0006026	aminoglycan catabolic process	None	Extended
BP	GO:0006030	chitin metabolic process	None	Extended
BP	GO:0006032	chitin catabolic process	IEA	Interproscan
BP	GO:0006040	amino sugar metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0016998	cell wall macromolecule catabolic process	IEA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044036	cell wall macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0046348	amino sugar catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901071	glucosamine-containing compound metabolic process	None	Extended
BP	GO:1901072	glucosamine-containing compound catabolic process	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901136	carbohydrate derivative catabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004650	polygalacturonase activity	IEP	HCCA
MF	GO:0005506	iron ion binding	IEP	HCCA
CC	GO:0005576	extracellular region	IEP	HCCA
CC	GO:0005618	cell wall	IEP	HCCA
BP	GO:0005975	carbohydrate metabolic process	IEP	HCCA
BP	GO:0005976	polysaccharide metabolic process	IEP	HCCA
BP	GO:0006073	cellular glucan metabolic process	IEP	HCCA
MF	GO:0008061	chitin binding	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	HCCA
MF	GO:0016758	hexosyltransferase activity	IEP	HCCA
MF	GO:0016762	xyloglucan:xyloglucosyl transferase activity	IEP	HCCA
MF	GO:0020037	heme binding	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
BP	GO:0044042	glucan metabolic process	IEP	HCCA
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	HCCA
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	HCCA
MF	GO:0046527	glucosyltransferase activity	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046906	tetrapyrrole binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
CC	GO:0048046	apoplast	IEP	HCCA
BP	GO:0055114	obsolete oxidation-reduction process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000726	Glyco_hydro_19_cat	32	177
IPR000726	Glyco_hydro_19_cat	182	229

External Links

No external refs found!

LOC_Os04g41620.1 (ATEP3, EP3, CHIV,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation