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  5. LOC_Os04g34460.1

LOC_Os04g34460.1 (LOC_Os04g34460)


Aliases : LOC_Os04g34460

Description : no description available(sp|q0jd85|pap7_orysj : 445.0)


Gene families : OG0007573 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007573_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g34460.1
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
AT5G09820 No alias Plastid-lipid associated protein PAP / fibrillin family protein 0.05 OrthoFinder output from all 47 species
Adi_g009706 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene38262.t1 Aspi01Gene38262 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.12G047100.1 Ceric.12G047100 not classified & original description: pacid=50601062... 0.07 OrthoFinder output from all 47 species
Cre03.g188700 No alias Probable plastid-lipid-associated protein 7,... 0.03 OrthoFinder output from all 47 species
Gb_08187 No alias no description available(sp|q0jd85|pap7_orysj : 97.8) 0.02 OrthoFinder output from all 47 species
Lfl_g09611 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_95157g0010 No alias no description available(sp|q0jd85|pap7_orysj : 236.0) 0.07 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012262 No alias Fibrillin plastoglobule core protein *(FBN4) & original... 0.04 OrthoFinder output from all 47 species
Solyc11g005340.3.1 Solyc11g005340 no description available(sp|q0jd85|pap7_orysj : 265.0) 0.04 OrthoFinder output from all 47 species
Tin_g22539 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e008148_P001 Zm00001e008148 no description available(sp|q0jd85|pap7_orysj : 338.0) 0.16 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004751 ribose-5-phosphate isomerase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
MF GO:0008080 N-acetyltransferase activity IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016407 acetyltransferase activity IEP HCCA
MF GO:0016410 N-acyltransferase activity IEP HCCA
MF GO:0016860 intramolecular oxidoreductase activity IEP HCCA
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0017038 protein import IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR006843 PAP/fibrillin_dom 87 270
No external refs found!