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  5. LOC_Os04g16872.1

LOC_Os04g16872.1 (PSBD, LOC_Os04g16872)


Aliases : PSBD, LOC_Os04g16872

Description : component PsbD/D2 of PS-II reaction center complex


Gene families : OG0001107 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001107_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g16872.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00270980 PSBA Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.13 OrthoFinder output from all 47 species
AMTR_s00071p00011330 PSBA Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.13 OrthoFinder output from all 47 species
AMTR_s00090p00098500 PSBA Photosystem II protein D1 OS=Nephroselmis olivacea 0.03 OrthoFinder output from all 47 species
AMTR_s00102p00106890 PSBD,... Photosystem II D2 protein OS=Amborella trichopoda 0.14 OrthoFinder output from all 47 species
AMTR_s00172p00027480 PSBA Photosystem II protein D1 OS=Amborella trichopoda 0.13 OrthoFinder output from all 47 species
AMTR_s00172p00030370 PSBA Photosystem II protein D1 OS=Amborella trichopoda 0.13 OrthoFinder output from all 47 species
AMTR_s00172p00038240 PSBA Photosystem II protein D1 OS=Amborella trichopoda 0.14 OrthoFinder output from all 47 species
AMTR_s00172p00040120 PSBA Photosystem II protein D1 OS=Amborella trichopoda 0.13 OrthoFinder output from all 47 species
AMTR_s00390p00002060 PSBA Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.13 OrthoFinder output from all 47 species
ATCG00020 PSBA photosystem II reaction center protein A 0.44 OrthoFinder output from all 47 species
ATCG00270 PSBD photosystem II reaction center protein D 0.11 OrthoFinder output from all 47 species
Aev_g03797 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.24 OrthoFinder output from all 47 species
Aev_g33560 PSBD component *(PsbD/D2) of PS-II reaction center complex &... 0.29 OrthoFinder output from all 47 species
Als_g05104 PSBD component *(PsbD/D2) of PS-II reaction center complex &... 0.17 OrthoFinder output from all 47 species
Als_g08173 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.07 OrthoFinder output from all 47 species
Aob_g01728 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.19 OrthoFinder output from all 47 species
Azfi_s0026.g023368 No alias not classified & original description: CDS=1-396 0.05 OrthoFinder output from all 47 species
Azfi_s0192.g057044 No alias not classified & original description: CDS=1-339 0.05 OrthoFinder output from all 47 species
Cba_g05717 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.05 OrthoFinder output from all 47 species
Cba_g74869 PSBD component *(PsbD/D2) of PS-II reaction center complex &... 0.08 OrthoFinder output from all 47 species
Ceric.01G054300.1 PSBA, Ceric.01G054300 not classified & original description: pacid=50591444... 0.2 OrthoFinder output from all 47 species
Ceric.01G066400.1 PSBA, Ceric.01G066400 not classified & original description: pacid=50590620... 0.25 OrthoFinder output from all 47 species
Ceric.02G016000.1 PSBD, Ceric.02G016000 component *(PsbD/D2) of PS-II reaction center complex &... 0.32 OrthoFinder output from all 47 species
Ceric.02G046500.1 PSBA, Ceric.02G046500 not classified & original description: pacid=50584544... 0.27 OrthoFinder output from all 47 species
Ceric.03G055000.1 PSBA, Ceric.03G055000 not classified & original description: pacid=50572846... 0.04 OrthoFinder output from all 47 species
Ceric.05G039300.1 PSBA, Ceric.05G039300 component *(PsbA/D1) of PS-II reaction center complex &... 0.19 OrthoFinder output from all 47 species
Ceric.05G040100.1 PSBA, Ceric.05G040100 component *(PsbA/D1) of PS-II reaction center complex &... 0.22 OrthoFinder output from all 47 species
Ceric.05G043300.1 PSBA, Ceric.05G043300 component *(PsbA/D1) of PS-II reaction center complex &... 0.26 OrthoFinder output from all 47 species
Ceric.06G028100.1 PSBA, Ceric.06G028100 not classified & original description: pacid=50620820... 0.29 OrthoFinder output from all 47 species
Ceric.07G016000.1 PSBA, Ceric.07G016000 not classified & original description: pacid=50626123... 0.28 OrthoFinder output from all 47 species
Ceric.07G060900.1 PSBA, Ceric.07G060900 component *(PsbA/D1) of PS-II reaction center complex &... 0.25 OrthoFinder output from all 47 species
Ceric.09G049700.1 PSBA, Ceric.09G049700 component *(PsbA/D1) of PS-II reaction center complex &... 0.26 OrthoFinder output from all 47 species
Ceric.11G046100.1 PSBD, Ceric.11G046100 not classified & original description: pacid=50594971... 0.04 OrthoFinder output from all 47 species
Ceric.12G058600.1 PSBA, Ceric.12G058600 not classified & original description: pacid=50600847... 0.24 OrthoFinder output from all 47 species
Ceric.13G053600.1 PSBA, Ceric.13G053600 not classified & original description: pacid=50635334... 0.21 OrthoFinder output from all 47 species
Ceric.16G061600.1 PSBA, Ceric.16G061600 not classified & original description: pacid=50589682... 0.25 OrthoFinder output from all 47 species
Ceric.18G054200.1 PSBA, Ceric.18G054200 component *(PsbA/D1) of PS-II reaction center complex &... 0.21 OrthoFinder output from all 47 species
Ceric.1Z020700.1 PSBA, Ceric.1Z020700 component *(PsbA/D1) of PS-II reaction center complex &... 0.23 OrthoFinder output from all 47 species
Ceric.1Z022800.1 PSBD, Ceric.1Z022800 component *(PsbD/D2) of PS-II reaction center complex &... 0.23 OrthoFinder output from all 47 species
Ceric.22G078100.1 PSBA, Ceric.22G078100 component *(PsbA/D1) of PS-II reaction center complex &... 0.25 OrthoFinder output from all 47 species
Ceric.23G039900.1 PSBA, Ceric.23G039900 not classified & original description: pacid=50611232... 0.16 OrthoFinder output from all 47 species
Ceric.23G081300.1 PSBD, Ceric.23G081300 component *(PsbD/D2) of PS-II reaction center complex &... 0.16 OrthoFinder output from all 47 species
Ceric.28G022100.1 PSBA, Ceric.28G022100 not classified & original description: pacid=50570095... 0.25 OrthoFinder output from all 47 species
Ceric.29G003100.1 PSBA, Ceric.29G003100 component *(PsbA/D1) of PS-II reaction center complex &... 0.26 OrthoFinder output from all 47 species
Ceric.29G032300.1 PSBD, Ceric.29G032300 component *(PsbD/D2) of PS-II reaction center complex &... 0.26 OrthoFinder output from all 47 species
Ceric.29G050900.1 PSBA, Ceric.29G050900 not classified & original description: pacid=50624438... 0.17 OrthoFinder output from all 47 species
Ceric.31G004800.1 PSBA, Ceric.31G004800 not classified & original description: pacid=50574421... 0.22 OrthoFinder output from all 47 species
Ceric.33G023400.1 PSBD, Ceric.33G023400 not classified & original description: pacid=50607236... 0.11 OrthoFinder output from all 47 species
Ceric.33G038500.1 PSBA, Ceric.33G038500 component *(PsbA/D1) of PS-II reaction center complex &... 0.26 OrthoFinder output from all 47 species
Ceric.34G004800.1 PSBA, Ceric.34G004800 component *(PsbA/D1) of PS-II reaction center complex &... 0.19 OrthoFinder output from all 47 species
Ceric.35G011500.1 PSBA, Ceric.35G011500 not classified & original description: pacid=50581506... 0.26 OrthoFinder output from all 47 species
Ceric.36G044800.1 PSBA, Ceric.36G044800 not classified & original description: pacid=50568302... 0.33 OrthoFinder output from all 47 species
Dcu_g24049 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.07 OrthoFinder output from all 47 species
Dde_g00539 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.08 OrthoFinder output from all 47 species
Ehy_g02156 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
GSVIVT01010924001 PSBD Photosystem II D2 protein OS=Vitis vinifera 0.1 OrthoFinder output from all 47 species
GSVIVT01016441001 PSBA Photosystem II protein D1 OS=Vitis vinifera 0.09 OrthoFinder output from all 47 species
GSVIVT01029661001 PSBD Photosystem II D2 protein OS=Vitis vinifera 0.1 OrthoFinder output from all 47 species
Gb_03955 PSBA Photosystem II protein D1 OS=Cryptomeria japonica... 0.18 OrthoFinder output from all 47 species
Gb_06825 PSBD no description available(sp|q85ac9|psbd_antag : 421.0) 0.03 OrthoFinder output from all 47 species
Gb_09035 PSBA Photosystem II protein D1 OS=Cryptomeria japonica... 0.17 OrthoFinder output from all 47 species
Gb_18604 PSBA Photosystem II protein D1 OS=Adiantum capillus-veneris... 0.18 OrthoFinder output from all 47 species
Gb_20129 PSBA Photosystem II protein D1 OS=Zygnema circumcarinatum... 0.14 OrthoFinder output from all 47 species
Gb_23102 PSBA no description available(sp|q85bh5|psba_antag : 432.0) 0.05 OrthoFinder output from all 47 species
Gb_26289 PSBA no description available(sp|q85bh5|psba_antag : 489.0) 0.08 OrthoFinder output from all 47 species
LOC_Os10g39880.1 PSBA, LOC_Os10g39880 Photosystem II protein D1 OS=Oryza sativa subsp. indica... 0.08 OrthoFinder output from all 47 species
Len_g50353 PSBD component *(PsbD/D2) of PS-II reaction center complex &... 0.07 OrthoFinder output from all 47 species
Lfl_g02222 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.11 OrthoFinder output from all 47 species
MA_166883g0010 PSBA Photosystem II protein D1 OS=Vicia faba... 0.04 OrthoFinder output from all 47 species
Mp1g09910.1 No alias Photosystem II protein D1 OS=Chlorella ellipsoidea... 0.14 OrthoFinder output from all 47 species
Mp3g12650.1 No alias Photosystem II protein D1 OS=Marchantia polymorpha... 0.14 OrthoFinder output from all 47 species
Msp_g06249 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.04 OrthoFinder output from all 47 species
Nbi_g06167 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.05 OrthoFinder output from all 47 species
Nbi_g40674 PSBD component *(PsbD/D2) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
Ore_g00373 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.24 OrthoFinder output from all 47 species
Ore_g12399 PSBD component *(PsbD/D2) of PS-II reaction center complex &... 0.23 OrthoFinder output from all 47 species
Pnu_g00529 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.07 OrthoFinder output from all 47 species
Pnu_g14362 PSBD component *(PsbD/D2) of PS-II reaction center complex &... 0.06 OrthoFinder output from all 47 species
Ppi_g01211 PSBD component *(PsbD/D2) of PS-II reaction center complex &... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g001231 PSBD not classified & original description: CDS=1-297 0.14 OrthoFinder output from all 47 species
Sacu_v1.1_s0004.g002256 PSBC not classified & original description: CDS=1-531 0.14 OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g004175 PSBA not classified & original description: CDS=1-357 0.12 OrthoFinder output from all 47 species
Sacu_v1.1_s0060.g015242 PSBA not classified & original description: CDS=1-252 0.14 OrthoFinder output from all 47 species
Sacu_v1.1_s0116.g021119 PSBA not classified & original description: CDS=1-291 0.12 OrthoFinder output from all 47 species
Sam_g01382 No alias component *(PsbD/D2) of PS-II reaction center complex &... 0.05 OrthoFinder output from all 47 species
Sam_g05154 No alias component *(PsbA/D1) of PS-II reaction center complex &... 0.13 OrthoFinder output from all 47 species
Smo137879 PSBD Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.28 OrthoFinder output from all 47 species
Smo139195 PSBA Photosystem II protein D1 OS=Phalaenopsis aphrodite... 0.24 OrthoFinder output from all 47 species
Smo236852 PSBA Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.24 OrthoFinder output from all 47 species
Solyc00g230080.1.1 PSBD, Solyc00g230080 Photosystem II D2 protein OS=Tupiella akineta... 0.03 OrthoFinder output from all 47 species
Solyc00g500130.1.1 PSBA, Solyc00g500130 component PsbA/D1 of PS-II reaction center complex 0.42 OrthoFinder output from all 47 species
Solyc00g500200.1.1 PSBA, Solyc00g500200 component PsbA/D1 of PS-II reaction center complex 0.42 OrthoFinder output from all 47 species
Solyc00g500296.1.1 PSBA, Solyc00g500296 component PsbA/D1 of PS-II reaction center complex 0.42 OrthoFinder output from all 47 species
Solyc00g500329.1.1 PSBA, Solyc00g500329 component PsbA/D1 of PS-II reaction center complex 0.43 OrthoFinder output from all 47 species
Solyc01g097530.3.1 PSBA, Solyc01g097530 Photosystem II protein D1 OS=Cuscuta obtusiflora... 0.04 OrthoFinder output from all 47 species
Solyc02g011990.1.1 PSBA, Solyc02g011990 Photosystem II protein D1 OS=Marchantia polymorpha... 0.04 OrthoFinder output from all 47 species
Solyc02g021290.1.1 PSBA, Solyc02g021290 Photosystem II protein D1 OS=Chlorella ellipsoidea... 0.05 OrthoFinder output from all 47 species
Solyc05g021190.2.1 PSBD, Solyc05g021190 Photosystem II D2 protein OS=Pleurastrum terricola... 0.03 OrthoFinder output from all 47 species
Solyc08g065370.1.1 PSBD, Solyc08g065370 Photosystem II D2 protein OS=Tupiella akineta... 0.03 OrthoFinder output from all 47 species
Solyc12g039030.1.1 PSBA, Solyc12g039030 Photosystem II protein D1 OS=Oltmannsiellopsis viridis... 0.08 OrthoFinder output from all 47 species
Spa_g04637 PSBD component *(PsbD/D2) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
Tin_g01230 PSBD component *(PsbD/D2) of PS-II reaction center complex &... 0.03 OrthoFinder output from all 47 species
Tin_g12149 PSBA component *(PsbA/D1) of PS-II reaction center complex &... 0.08 OrthoFinder output from all 47 species
Zm00001e015953_P001 PSBD, Zm00001e015953 component PsbD/D2 of PS-II reaction center complex 0.18 OrthoFinder output from all 47 species
Zm00001e036844_P001 PSBA, Zm00001e036844 Photosystem II protein D1 OS=Zea mays... 0.14 OrthoFinder output from all 47 species
Zm00001e042043_P001 PSBD, Zm00001e042043 Photosystem II D2 protein OS=Angiopteris evecta... 0.11 OrthoFinder output from all 47 species
Zm00001e042109_P001 PSBD, Zm00001e042109 Photosystem II D2 protein OS=Angiopteris evecta... 0.11 OrthoFinder output from all 47 species
Zm00001e042113_P001 PSBA, Zm00001e042113 Photosystem II protein D1 OS=Zea mays... 0.15 OrthoFinder output from all 47 species
Zm00001e042158_P001 PSBD, Zm00001e042158 Photosystem II D2 protein OS=Angiopteris evecta... 0.11 OrthoFinder output from all 47 species
Zm00001e042173_P001 PSBD, Zm00001e042173 Photosystem II D2 protein OS=Angiopteris evecta... 0.11 OrthoFinder output from all 47 species
Zm00001e042176_P001 PSBA, Zm00001e042176 component PsbA/D1 of PS-II reaction center complex 0.18 OrthoFinder output from all 47 species
Zm00001e042427_P001 PSBD, Zm00001e042427 component PsbD/D2 of PS-II reaction center complex 0.18 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0009772 photosynthetic electron transport in photosystem II IEA Interproscan
BP GO:0019684 photosynthesis, light reaction IEA Interproscan
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009539 photosystem II reaction center IEP HCCA
CC GO:0009579 thylakoid IEP HCCA
BP GO:0010109 regulation of photosynthesis IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016168 chlorophyll binding IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0042548 regulation of photosynthesis, light reaction IEP HCCA
BP GO:0042549 photosystem II stabilization IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043467 regulation of generation of precursor metabolites and energy IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR000484 Photo_RC_L/M 29 318
No external refs found!