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  5. LOC_Os04g16866.1

LOC_Os04g16866.1 (LOC_Os04g16866)


Aliases : LOC_Os04g16866

Description : component PsbK of PS-II complex


Gene families : OG0007203 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007203_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os04g16866.1

Target Alias Description ECC score Gene Family Method Actions
ATCG00070 PSBK photosystem II reaction center protein K precursor 0.5 OrthoFinder output from all 47 species
Ceric.01G057000.1 PSBI, Ceric.01G057000 component *(PsbI) of PS-II reaction center complex &... 0.26 OrthoFinder output from all 47 species
Ceric.01G057100.1 PSBK, Ceric.01G057100 component *(PsbK) of PS-II complex & original... 0.19 OrthoFinder output from all 47 species
Ceric.01G104900.1 PSBK, Ceric.01G104900 component *(PsbK) of PS-II complex & original... 0.19 OrthoFinder output from all 47 species
Ceric.01G105000.1 PSBI, Ceric.01G105000 component *(PsbI) of PS-II reaction center complex &... 0.26 OrthoFinder output from all 47 species
Ceric.02G012100.1 PSBI, Ceric.02G012100 component *(PsbI) of PS-II reaction center complex &... 0.26 OrthoFinder output from all 47 species
Ceric.05G040800.1 PSBK, Ceric.05G040800 component *(PsbK) of PS-II complex & original... 0.09 OrthoFinder output from all 47 species
Ceric.12G058300.1 PSBK, Ceric.12G058300 component *(PsbK) of PS-II complex & original... 0.19 OrthoFinder output from all 47 species
Ceric.13G052800.1 PSBI, Ceric.13G052800 component *(PsbI) of PS-II reaction center complex &... 0.26 OrthoFinder output from all 47 species
Ceric.13G052900.1 PSBK, Ceric.13G052900 component *(PsbK) of PS-II complex & original... 0.03 OrthoFinder output from all 47 species
Ceric.1Z023200.1 PSBI, Ceric.1Z023200 component *(PsbI) of PS-II reaction center complex &... 0.26 OrthoFinder output from all 47 species
Ceric.1Z116900.1 PSBK, Ceric.1Z116900 component *(PsbK) of PS-II complex & original... 0.13 OrthoFinder output from all 47 species
Ceric.1Z117000.1 PSBI, Ceric.1Z117000 component *(PsbI) of PS-II reaction center complex &... 0.26 OrthoFinder output from all 47 species
Ceric.26G042600.1 PSBK, Ceric.26G042600 component *(PsbK) of PS-II complex & original... 0.19 OrthoFinder output from all 47 species
Ceric.29G005500.1 PSBI, Ceric.29G005500 component *(PsbI) of PS-II reaction center complex &... 0.26 OrthoFinder output from all 47 species
Ceric.29G005600.1 PSBK, Ceric.29G005600 component *(PsbK) of PS-II complex & original... 0.19 OrthoFinder output from all 47 species
GSVIVT01037458001 No alias Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.08 OrthoFinder output from all 47 species
Smo137749 No alias Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.05 OrthoFinder output from all 47 species
Solyc00g500049.1.1 PSBK, Solyc00g500049 component PsbI of PS-II reaction center complex.... 0.41 OrthoFinder output from all 47 species
Solyc00g500132.1.1 PSBK, Solyc00g500132 component PsbI of PS-II reaction center complex.... 0.41 OrthoFinder output from all 47 species
Solyc00g500202.1.1 PSBK, Solyc00g500202 component PsbI of PS-II reaction center complex.... 0.41 OrthoFinder output from all 47 species
Solyc00g500293.1.1 PSBK, Solyc00g500293 component PsbI of PS-II reaction center complex.... 0.43 OrthoFinder output from all 47 species
Solyc00g500331.1.1 PSBK, Solyc00g500331 component PsbI of PS-II reaction center complex.... 0.41 OrthoFinder output from all 47 species
Zm00001e042045_P001 PSBK, Zm00001e042045 component PsbK of PS-II complex 0.17 OrthoFinder output from all 47 species
Zm00001e042111_P001 PSBK, Zm00001e042111 component PsbK of PS-II complex 0.18 OrthoFinder output from all 47 species
Zm00001e042159_P001 PSBK, Zm00001e042159 component PsbK of PS-II complex 0.16 OrthoFinder output from all 47 species
Zm00001e042175_P001 PSBK, Zm00001e042175 component PsbK of PS-II complex 0.17 OrthoFinder output from all 47 species
Zm00001e042230_P001 PSBK, Zm00001e042230 component PsbK of PS-II complex 0.18 OrthoFinder output from all 47 species
Zm00001e042357_P001 PSBK, Zm00001e042357 component PsbK of PS-II complex 0.17 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0009523 photosystem II IEA Interproscan
CC GO:0009539 photosystem II reaction center IEA Interproscan
BP GO:0015979 photosynthesis IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0009055 electron transfer activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
BP GO:0009767 photosynthetic electron transport chain IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016168 chlorophyll binding IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
BP GO:0017004 cytochrome complex assembly IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019684 photosynthesis, light reaction IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR003687 PSII_PsbK 22 61
No external refs found!