LOC_Os04g02960.1 (CRK8, LOC_Os04g02960)

Aliases : CRK8, LOC_Os04g02960

Description : Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum (sp|p10978|polx_tobac : 676.0)

Gene families : OG0004834 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004834_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os04g02960.1

Target	Alias	Description	ECC score	Gene Family Method
LOC_Os01g27660.1	LOC_Os01g27660	no hits & (original description: none)	0.06	OrthoFinder output from all 47 species
LOC_Os01g35210.1	LOC_Os01g35210	no hits & (original description: none)	0.06	OrthoFinder output from all 47 species
LOC_Os01g55470.1	LOC_Os01g55470	no hits & (original description: none)	0.07	OrthoFinder output from all 47 species
LOC_Os02g05570.1	LOC_Os02g05570	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
LOC_Os04g08804.1	LOC_Os04g08804	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
LOC_Os04g08812.1	LOC_Os04g08812	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
LOC_Os04g16120.1	LOC_Os04g16120	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
LOC_Os04g21370.1	LOC_Os04g21370	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
LOC_Os06g16080.1	LOC_Os06g16080	no hits & (original description: none)	0.06	OrthoFinder output from all 47 species
LOC_Os08g08180.1	LOC_Os08g08180	no hits & (original description: none)	0.06	OrthoFinder output from all 47 species
LOC_Os08g17340.1	LOC_Os08g17340	no hits & (original description: none)	0.12	OrthoFinder output from all 47 species
LOC_Os08g28310.1	LOC_Os08g28310	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
LOC_Os09g18220.1	LOC_Os09g18220	no hits & (original description: none)	0.07	OrthoFinder output from all 47 species
LOC_Os09g29720.1	LOC_Os09g29720	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
LOC_Os10g25960.1	LOC_Os10g25960	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
LOC_Os11g43160.1	LOC_Os11g43160	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
LOC_Os11g43170.1	LOC_Os11g43170	no hits & (original description: none)	0.09	OrthoFinder output from all 47 species
LOC_Os12g16110.1	LOC_Os12g16110	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
LOC_Os12g26120.1	LOC_Os12g26120	no hits & (original description: none)	0.06	OrthoFinder output from all 47 species
LOC_Os12g27230.1	LOC_Os12g27230	no hits & (original description: none)	0.06	OrthoFinder output from all 47 species
LOC_Os12g31050.1	LOC_Os12g31050	no hits & (original description: none)	0.06	OrthoFinder output from all 47 species
LOC_Os12g35830.1	LOC_Os12g35830	no hits & (original description: none)	0.06	OrthoFinder output from all 47 species
LOC_Os12g37190.1	LOC_Os12g37190	no hits & (original description: none)	0.09	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004175	endopeptidase activity	None	Extended
MF	GO:0004252	serine-type endopeptidase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006508	proteolysis	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008236	serine-type peptidase activity	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0017171	serine hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0008168	methyltransferase activity	IEP	HCCA
MF	GO:0008171	O-methyltransferase activity	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	HCCA
MF	GO:0046983	protein dimerization activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR013103	RVT_2	2196	2435
IPR025724	GAG-pre-integrase_dom	1780	1848
IPR001584	Integrase_cat-core	1862	1977
IPR000209	Peptidase_S8/S53_dom	1085	1363
IPR001878	Znf_CCHC	1614	1631

External Links

No external refs found!

LOC_Os04g02960.1 (CRK8, LOC_Os04g02960)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation