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  5. LOC_Os03g62660.1

LOC_Os03g62660.1 (FRS8, LOC_Os03g62660)


Aliases : FRS8, LOC_Os03g62660

Description : transcription factor (FAR1)


Gene families : OG0002906 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002906_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g62660.1

Target Alias Description ECC score Gene Family Method Actions
AT1G76320 FRS4 FAR1-related sequence 4 0.04 OrthoFinder output from all 47 species
AT4G15090 FAR1 FRS (FAR1 Related Sequences) transcription factor family 0.05 OrthoFinder output from all 47 species
AT4G19990 FRS1 FAR1-related sequence 1 0.02 OrthoFinder output from all 47 species
AT5G18960 FRS12 FAR1-related sequence 12 0.03 OrthoFinder output from all 47 species
GSVIVT01015829001 FAR1 RNA biosynthesis.transcriptional activation.FAR1... 0.03 OrthoFinder output from all 47 species
GSVIVT01017369001 FRS8 RNA biosynthesis.transcriptional activation.FAR1... 0.05 OrthoFinder output from all 47 species
GSVIVT01023847001 FRS9 RNA biosynthesis.transcriptional activation.FAR1... 0.02 OrthoFinder output from all 47 species
GSVIVT01037455001 FRS3 RNA biosynthesis.transcriptional activation.FAR1... 0.05 OrthoFinder output from all 47 species
Solyc01g016665.1.1 FRS5, Solyc01g016665 transcription factor (FAR1) 0.01 OrthoFinder output from all 47 species
Solyc01g096850.4.1 FRS3, Solyc01g096850 transcription factor (FAR1) 0.08 OrthoFinder output from all 47 species
Solyc01g112320.3.1 FRS5, Solyc01g112320 transcription factor (FAR1) 0.08 OrthoFinder output from all 47 species
Solyc02g068550.2.1 FAR1, Solyc02g068550 transcription factor (FAR1) 0.04 OrthoFinder output from all 47 species
Solyc03g117520.3.1 FRS6, Solyc03g117520 transcription factor (FAR1) 0.03 OrthoFinder output from all 47 species
Solyc03g121630.3.1 FRS4, Solyc03g121630 transcription factor (FAR1) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002098 tRNA wobble uridine modification IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016278 lysine N-methyltransferase activity IEP HCCA
MF GO:0016279 protein-lysine N-methyltransferase activity IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
MF GO:0017069 snRNA binding IEP HCCA
MF GO:0017070 U6 snRNA binding IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
MF GO:0030623 U5 snRNA binding IEP HCCA
BP GO:0032259 methylation IEP HCCA
CC GO:0033588 elongator holoenzyme complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
MF GO:0042054 histone methyltransferase activity IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR018289 MULE_transposase_dom 229 320
IPR004330 FAR1_DNA_bnd_dom 42 126
No external refs found!