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  5. LOC_Os03g53640.1

LOC_Os03g53640.1 (Psb27-H1, LPA19,...)


Aliases : Psb27-H1, LPA19, LOC_Os03g53640

Description : Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Arabidopsis thaliana (sp|q9zvz9|pb27b_arath : 152.0)


Gene families : OG0004638 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004638_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g53640.1
Cluster HCCA: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
AT1G05385 Psb27-H1, LPA19 photosystem II 11 kDa protein-related 0.02 OrthoFinder output from all 47 species
Adi_g021001 Psb27-H1, LPA19 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g22474 Psb27-H1, LPA19 not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aob_g13113 Psb27-H1, LPA19 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cre02.g073850 No alias No description available 0.06 OrthoFinder output from all 47 species
Dcu_g34104 Psb27-H1, LPA19 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g37645 Psb27-H1, LPA19 not classified & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01017974001 Psb27-H1, LPA19 Photosystem II D1 precursor processing protein PSB27-H2,... 0.11 OrthoFinder output from all 47 species
Lfl_g05157 Psb27-H1, LPA19 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g08997 Psb27-H1, LPA19 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g30336 Psb27-H1, LPA19 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g11979 Psb27-H1, LPA19 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0218.g026101 Psb27-H1, LPA19 not classified & original description: CDS=109-834 0.02 OrthoFinder output from all 47 species
Solyc09g076030.4.1 Psb27-H1, LPA19,... Photosystem II D1 precursor processing protein PSB27-H2,... 0.07 OrthoFinder output from all 47 species
Spa_g30155 Psb27-H1, LPA19 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g51028 Psb27-H1, LPA19 not classified & original description: none 0.09 OrthoFinder output from all 47 species
Zm00001e012045_P001 Psb27-H1, LPA19,... Photosystem II D1 precursor processing protein PSB27-H2,... 0.15 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0010207 photosystem II assembly IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005381 iron ion transmembrane transporter activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006450 regulation of translational fidelity IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006826 iron ion transport IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009536 plastid IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034755 iron ion transmembrane transport IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0046915 transition metal ion transmembrane transporter activity IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0065008 regulation of biological quality IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR025585 PSII_Pbs27 57 212
No external refs found!