LOC_Os03g52660.1 (LOC_Os03g52660)

Aliases : LOC_Os03g52660

Description : no hits & (original description: none)

Gene families : OG0001923 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001923_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LOC_Os03g52660.1

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00022p00232380	ATPD,...	Photosynthesis.photophosphorylation.ATP synthase...	0.06	OrthoFinder output from all 47 species
AT4G09650	ATPD	ATP synthase delta-subunit gene	0.05	OrthoFinder output from all 47 species
Adi_g040500	ATPD	subunit delta of peripheral CF1 subcomplex of ATP...	0.02	OrthoFinder output from all 47 species
Adi_g040501	ATPD	subunit delta of peripheral CF1 subcomplex of ATP...	0.02	OrthoFinder output from all 47 species
Aev_g05188	ATPD	subunit delta of peripheral CF1 subcomplex of ATP...	0.04	OrthoFinder output from all 47 species
Aob_g04089	ATPD	subunit delta of peripheral CF1 subcomplex of ATP...	0.03	OrthoFinder output from all 47 species
Aob_g05620	ATPD	subunit delta of peripheral CF1 subcomplex of ATP...	0.04	OrthoFinder output from all 47 species
Aop_g01177	ATPD	subunit delta of peripheral CF1 subcomplex of ATP...	0.04	OrthoFinder output from all 47 species
Aop_g27621	ATPD	subunit delta of peripheral CF1 subcomplex of ATP...	0.03	OrthoFinder output from all 47 species
Aspi01Gene30200.t1	ATPD, Aspi01Gene30200	subunit delta of peripheral CF1 subcomplex of ATP...	0.03	OrthoFinder output from all 47 species
Aspi01Gene41011.t1	ATPD, Aspi01Gene41011	subunit delta of peripheral CF1 subcomplex of ATP...	0.04	OrthoFinder output from all 47 species
Aspi01Gene45435.t1	ATPD, Aspi01Gene45435	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0073.g037144	ATPD	subunit delta of peripheral CF1 subcomplex of ATP...	0.02	OrthoFinder output from all 47 species
Ceric.15G029000.1	ATPD, Ceric.15G029000	subunit delta of peripheral CF1 subcomplex of ATP...	0.04	OrthoFinder output from all 47 species
Ceric.27G011900.1	ATPD, Ceric.27G011900	subunit delta of peripheral CF1 subcomplex of ATP...	0.04	OrthoFinder output from all 47 species
Ceric.36G009700.1	ATPD, Ceric.36G009700	subunit delta of peripheral CF1 subcomplex of ATP...	0.03	OrthoFinder output from all 47 species
Dac_g03133	ATPD	subunit delta of peripheral CF1 subcomplex of ATP...	0.05	OrthoFinder output from all 47 species
Dac_g05575	ATPD	subunit delta of peripheral CF1 subcomplex of ATP...	0.03	OrthoFinder output from all 47 species
Dcu_g00763	ATPD	subunit delta of peripheral CF1 subcomplex of ATP...	0.02	OrthoFinder output from all 47 species
Dcu_g00798	ATPD	subunit delta of peripheral CF1 subcomplex of ATP...	0.06	OrthoFinder output from all 47 species
Ehy_g08260	ATPD	subunit delta of peripheral CF1 subcomplex of ATP...	0.05	OrthoFinder output from all 47 species
GSVIVT01001595001	ATPD	Photosynthesis.photophosphorylation.ATP synthase...	0.05	OrthoFinder output from all 47 species
Len_g02669	ATPD	subunit delta of peripheral CF1 subcomplex of ATP...	0.03	OrthoFinder output from all 47 species
Len_g04666	ATPD	subunit delta of peripheral CF1 subcomplex of ATP...	0.02	OrthoFinder output from all 47 species
MA_10744g0010	ATPD	subunit delta of peripheral CF1 subcomplex of ATP...	0.03	OrthoFinder output from all 47 species
Mp3g05790.1	ATPD	subunit delta of peripheral CF1 subcomplex of ATP...	0.05	OrthoFinder output from all 47 species
Msp_g05321	ATPD	subunit delta of peripheral CF1 subcomplex of ATP...	0.02	OrthoFinder output from all 47 species
Ore_g18978	ATPD	subunit delta of peripheral CF1 subcomplex of ATP...	0.03	OrthoFinder output from all 47 species
Ore_g27681	ATPD	subunit delta of peripheral CF1 subcomplex of ATP...	0.04	OrthoFinder output from all 47 species
Pir_g00419	ATPD	subunit delta of peripheral CF1 subcomplex of ATP...	0.03	OrthoFinder output from all 47 species
Pp3c23_6060V3.1	ATPD, Pp3c23_6060	ATP synthase delta-subunit gene	0.03	OrthoFinder output from all 47 species
Ppi_g02890	ATPD	subunit delta of peripheral CF1 subcomplex of ATP...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0130.g022065	ATPD	subunit delta of peripheral CF1 subcomplex of ATP...	0.05	OrthoFinder output from all 47 species
Smo128732	No alias	Photosynthesis.photophosphorylation.ATP synthase...	0.03	OrthoFinder output from all 47 species
Solyc05g050500.1.1	Solyc05g050500	ATP synthase delta chain, chloroplastic OS=Spinacia...	0.04	OrthoFinder output from all 47 species
Solyc12g056830.1.1	ATPD, Solyc12g056830	subunit delta of peripheral CF1 subcomplex of ATP...	0.02	OrthoFinder output from all 47 species
Spa_g07562	ATPD	subunit delta of peripheral CF1 subcomplex of ATP...	0.07	OrthoFinder output from all 47 species
Spa_g07563	ATPD	subunit delta of peripheral CF1 subcomplex of ATP...	0.06	OrthoFinder output from all 47 species
Tin_g03812	ATPD	subunit delta of peripheral CF1 subcomplex of ATP...	0.04	OrthoFinder output from all 47 species
Zm00001e023884_P001	ATPD, Zm00001e023884	subunit delta of peripheral CF1 subcomplex of ATP...	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005216	monoatomic ion channel activity	None	Extended
MF	GO:0005261	monoatomic cation channel activity	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006163	purine nucleotide metabolic process	None	Extended
BP	GO:0006164	purine nucleotide biosynthetic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006754	ATP biosynthetic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008324	monoatomic cation transmembrane transporter activity	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009141	nucleoside triphosphate metabolic process	None	Extended
BP	GO:0009142	nucleoside triphosphate biosynthetic process	None	Extended
BP	GO:0009144	purine nucleoside triphosphate metabolic process	None	Extended
BP	GO:0009145	purine nucleoside triphosphate biosynthetic process	None	Extended
BP	GO:0009150	purine ribonucleotide metabolic process	None	Extended
BP	GO:0009152	purine ribonucleotide biosynthetic process	None	Extended
BP	GO:0009165	nucleotide biosynthetic process	None	Extended
BP	GO:0009199	ribonucleoside triphosphate metabolic process	None	Extended
BP	GO:0009201	ribonucleoside triphosphate biosynthetic process	None	Extended
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	None	Extended
BP	GO:0009206	purine ribonucleoside triphosphate biosynthetic process	None	Extended
BP	GO:0009259	ribonucleotide metabolic process	None	Extended
BP	GO:0009260	ribonucleotide biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015075	monoatomic ion transmembrane transporter activity	None	Extended
MF	GO:0015078	proton transmembrane transporter activity	None	Extended
MF	GO:0015252	proton channel activity	None	Extended
MF	GO:0015267	channel activity	None	Extended
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	None	Extended
BP	GO:0015986	proton motive force-driven ATP synthesis	IEA	Interproscan
MF	GO:0016874	ligase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019693	ribose phosphate metabolic process	None	Extended
MF	GO:0022803	passive transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0022890	inorganic cation transmembrane transporter activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046034	ATP metabolic process	None	Extended
BP	GO:0046390	ribose phosphate biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism	IEA	Interproscan
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072521	purine-containing compound metabolic process	None	Extended
BP	GO:0072522	purine-containing compound biosynthetic process	None	Extended
BP	GO:0090407	organophosphate biosynthetic process	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901137	carbohydrate derivative biosynthetic process	None	Extended
BP	GO:1901293	nucleoside phosphate biosynthetic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
BP	GO:0006355	regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0009889	regulation of biosynthetic process	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
BP	GO:0031323	regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051252	regulation of RNA metabolic process	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0065007	biological regulation	IEP	HCCA
BP	GO:0080090	regulation of primary metabolic process	IEP	HCCA
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000711	ATPase_OSCP/dsu	125	196

External Links

No external refs found!

LOC_Os03g52660.1 (LOC_Os03g52660)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation