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  5. LOC_Os03g40010.1

LOC_Os03g40010.1 (LOC_Os03g40010)


Aliases : LOC_Os03g40010

Description : no hits & (original description: none)


Gene families : OG0001438 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001438_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g40010.1
Cluster HCCA: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00047p00118220 evm_27.TU.AmTr_v1... No description available 0.05 OrthoFinder output from all 47 species
AT4G26630 No alias DEK domain-containing chromatin associated protein 0.06 OrthoFinder output from all 47 species
AT5G55660 No alias DEK domain-containing chromatin associated protein 0.05 OrthoFinder output from all 47 species
Aob_g05123 No alias chromatin architectural modulator *(DEK) & original... 0.02 OrthoFinder output from all 47 species
Aop_g11700 No alias chromatin architectural modulator *(DEK) & original... 0.04 OrthoFinder output from all 47 species
Ceric.1Z004400.1 Ceric.1Z004400 chromatin architectural modulator *(DEK) & original... 0.04 OrthoFinder output from all 47 species
Ceric.20G046000.1 Ceric.20G046000 chromatin architectural modulator *(DEK) & original... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000692.24 No alias No description available 0.02 OrthoFinder output from all 47 species
Dcu_g03983 No alias chromatin architectural modulator *(DEK) & original... 0.02 OrthoFinder output from all 47 species
Mp7g19100.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Smo438416 No alias No description available 0.05 OrthoFinder output from all 47 species
Solyc03g097490.4.1 Solyc03g097490 no hits & (original description: none) 0.08 OrthoFinder output from all 47 species
Solyc07g065490.3.1 Solyc07g065490 no hits & (original description: none) 0.07 OrthoFinder output from all 47 species
Spa_g12464 No alias chromatin architectural modulator *(DEK) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e004959_P001 Zm00001e004959 no hits & (original description: none) 0.09 OrthoFinder output from all 47 species
Zm00001e012462_P001 Zm00001e012462 no hits & (original description: none) 0.1 OrthoFinder output from all 47 species
Zm00001e028422_P002 Zm00001e028422 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002100 tRNA wobble adenosine to inosine editing IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004000 adenosine deaminase activity IEP HCCA
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006382 adenosine to inosine editing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008251 tRNA-specific adenosine deaminase activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016553 base conversion or substitution editing IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
MF GO:0019239 deaminase activity IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0030688 preribosome, small subunit precursor IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
CC GO:0034457 Mpp10 complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR014876 DEK_C 616 669
No external refs found!