1. Home
  2. Species
  3. Oryza sativa
  4. Sequence
  5. LOC_Os03g25980.2

LOC_Os03g25980.2 (PTB1, PTB, ATPTB1,...)


Aliases : PTB1, PTB, ATPTB1, LOC_Os03g25980

Description : PTB-type RNA splicing factor


Gene families : OG0001527 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001527_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g25980.2

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00107p00143110 PTB2, ATPTB2,... RNA processing.RNA splicing.spliceosome-associated... 0.04 OrthoFinder output from all 47 species
Aev_g05331 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g16201 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g10256 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08592 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0075.g037678 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: CDS=297-2102 0.03 OrthoFinder output from all 47 species
Ceric.09G093000.1 PTB2, ATPTB2,... RNA splicing factor *(PTB) & original description:... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000144.21 No alias Polypyrimidine tract-binding protein homolog 3... 0.01 OrthoFinder output from all 47 species
Dac_g44883 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g11646 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g38746 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g06615 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.03 OrthoFinder output from all 47 species
MA_10431256g0010 PTB1, PTB, ATPTB1 PTB-type RNA splicing factor 0.02 OrthoFinder output from all 47 species
Mp7g10030.1 PTB2, ATPTB2 PTB-type RNA splicing factor 0.03 OrthoFinder output from all 47 species
Nbi_g12428 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g08278 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g02547 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g11612 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g36099 No alias RNA splicing factor *(PTB) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc02g088110.4.1 PTB1, PTB,... PTB-type RNA splicing factor 0.04 OrthoFinder output from all 47 species
Solyc03g007320.4.1 PTB2, ATPTB2,... PTB-type RNA splicing factor 0.04 OrthoFinder output from all 47 species
Tin_g04014 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000030 mannosyltransferase activity IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0004376 glycolipid mannosyltransferase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
CC GO:0005849 mRNA cleavage factor complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006378 mRNA polyadenylation IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006497 protein lipidation IEP HCCA
BP GO:0006505 GPI anchor metabolic process IEP HCCA
BP GO:0006506 GPI anchor biosynthetic process IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006643 membrane lipid metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0006661 phosphatidylinositol biosynthetic process IEP HCCA
BP GO:0006664 glycolipid metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0009247 glycolipid biosynthetic process IEP HCCA
BP GO:0010498 proteasomal protein catabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0030163 protein catabolic process IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
CC GO:0035658 Mon1-Ccz1 complex IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0043631 RNA polyadenylation IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0045017 glycerolipid biosynthetic process IEP HCCA
BP GO:0046467 membrane lipid biosynthetic process IEP HCCA
BP GO:0046474 glycerophospholipid biosynthetic process IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0051751 alpha-1,4-mannosyltransferase activity IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
BP GO:1903509 liposaccharide metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 25 73
IPR021790 PTBP1-like_RRM2 244 323
No external refs found!