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  5. LOC_Os03g20020.1

LOC_Os03g20020.1 (LOC_Os03g20020)


Aliases : LOC_Os03g20020

Description : alkaline sucrose-specific invertase (CIN)


Gene families : OG0001417 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001417_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g20020.1

Target Alias Description ECC score Gene Family Method Actions
Aob_g03483 INV-E, At-A/N-InvE alkaline sucrose-specific invertase *(CIN) & original... 0.02 OrthoFinder output from all 47 species
Aop_g26953 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0345.g065806 INV-E, At-A/N-InvE not classified & original description: CDS=1-1077 0.02 OrthoFinder output from all 47 species
Ceric.30G074500.1 INV-E,... alkaline sucrose-specific invertase *(CIN) & original... 0.03 OrthoFinder output from all 47 species
Dde_g02908 No alias alkaline sucrose-specific invertase *(CIN) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01031374001 INV-E, At-A/N-InvE Alkaline/neutral invertase E, chloroplastic... 0.03 OrthoFinder output from all 47 species
GSVIVT01034944001 No alias Alkaline/neutral invertase C, mitochondrial... 0.03 OrthoFinder output from all 47 species
Gb_06883 No alias alkaline sucrose-specific invertase (CIN) 0.03 OrthoFinder output from all 47 species
Sam_g15622 No alias alkaline sucrose-specific invertase *(CIN) & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0003993 acid phosphatase activity IEP HCCA
MF GO:0004555 alpha,alpha-trehalase activity IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0005984 disaccharide metabolic process IEP HCCA
BP GO:0005991 trehalose metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
BP GO:0009311 oligosaccharide metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015927 trehalase activity IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
MF GO:0017150 tRNA dihydrouridine synthase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0106413 dihydrouridine synthase activity IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR024746 Glyco_hydro_100 145 587
No external refs found!