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  5. LOC_Os03g17580.1

LOC_Os03g17580.1 (LOC_Os03g17580)


Aliases : LOC_Os03g17580

Description : component mtRPL10|psRPL10 of large ribosomal subunit proteome. component psRPL10|mtRPL10 of large ribosomal subunit proteome


Gene families : OG0005040 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005040_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g17580.1
Cluster HCCA: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00023p00218670 evm_27.TU.AmTr_v1... Protein biosynthesis.organelle translation... 0.07 OrthoFinder output from all 47 species
AT5G13510 No alias Ribosomal protein L10 family protein 0.21 OrthoFinder output from all 47 species
Adi_g039494 No alias component *(uL10) of organelle large ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Adi_g084574 No alias component *(uL10) of organelle large ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Aev_g00872 No alias component *(uL10c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Ala_g04789 No alias component *(uL10c) of large plastid ribosomal-subunit... 0.12 OrthoFinder output from all 47 species
Als_g52226 No alias component *(uL10c) of large plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Aob_g00810 No alias component *(uL10c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Aop_g05054 No alias component *(uL10c) of large plastid ribosomal-subunit... 0.11 OrthoFinder output from all 47 species
Aspi01Gene09795.t1 Aspi01Gene09795 component *(uL10c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Aspi01Gene48059.t1 Aspi01Gene48059 component *(uL10c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Cba_g27816 No alias component *(uL10) of organelle large ribosomal-subunit... 0.06 OrthoFinder output from all 47 species
Ceric.20G078900.1 Ceric.20G078900 component *(uL10c) of large plastid ribosomal-subunit... 0.2 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020516.18 No alias Protein biosynthesis.organelle translation... 0.01 OrthoFinder output from all 47 species
Cre06.g272850 No alias Protein biosynthesis.organelle translation... 0.13 OrthoFinder output from all 47 species
Dac_g03164 No alias component *(uL10c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Dcu_g03520 No alias component *(uL10c) of large plastid ribosomal-subunit... 0.11 OrthoFinder output from all 47 species
Ehy_g00714 No alias component *(uL10c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
GSVIVT01032650001 No alias Protein biosynthesis.organelle translation... 0.08 OrthoFinder output from all 47 species
Gb_21730 No alias component mtRPL10|psRPL10 of large ribosomal subunit... 0.11 OrthoFinder output from all 47 species
Len_g13372 No alias component *(uL10c) of large plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
Lfl_g00434 No alias component *(uL10c) of large plastid ribosomal-subunit... 0.1 OrthoFinder output from all 47 species
MA_483364g0010 No alias component mtRPL10|psRPL10 of large ribosomal subunit... 0.08 OrthoFinder output from all 47 species
Mp4g07300.1 No alias component mtRPL10|psRPL10 of large ribosomal subunit... 0.23 OrthoFinder output from all 47 species
Msp_g00974 No alias component *(uL10c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Nbi_g00675 No alias component *(uL10c) of large plastid ribosomal-subunit... 0.09 OrthoFinder output from all 47 species
Ore_g19831 No alias component *(uL10c) of large plastid ribosomal-subunit... 0.07 OrthoFinder output from all 47 species
Ore_g30194 No alias component *(uL10c) of large plastid ribosomal-subunit... 0.03 OrthoFinder output from all 47 species
Pir_g11548 No alias component *(uL10c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Pp3c1_1330V3.1 Pp3c1_1330 Ribosomal protein L10 family protein 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0022.g008577 No alias component *(uL10c) of large plastid ribosomal-subunit... 0.05 OrthoFinder output from all 47 species
Smo233811 No alias Protein biosynthesis.organelle translation... 0.03 OrthoFinder output from all 47 species
Solyc04g009540.1.1 Solyc04g009540 component mtRPL10|psRPL10 of large ribosomal subunit... 0.09 OrthoFinder output from all 47 species
Spa_g24954 No alias component *(uL10c) of large plastid ribosomal-subunit... 0.08 OrthoFinder output from all 47 species
Tin_g00512 No alias component *(uL10c) of large plastid ribosomal-subunit... 0.04 OrthoFinder output from all 47 species
Zm00001e001284_P001 Zm00001e001284 component mtRPL10|psRPL10 of large ribosomal subunit... 0.15 OrthoFinder output from all 47 species
Zm00001e038440_P001 Zm00001e038440 component mtRPL10|psRPL10 of large ribosomal subunit... 0.25 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0042254 ribosome biogenesis IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005381 iron ion transmembrane transporter activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006450 regulation of translational fidelity IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006778 porphyrin-containing compound metabolic process IEP HCCA
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006826 iron ion transport IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009536 plastid IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
BP GO:0010207 photosystem II assembly IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0015994 chlorophyll metabolic process IEP HCCA
BP GO:0015995 chlorophyll biosynthetic process IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0034755 iron ion transmembrane transport IEP HCCA
BP GO:0042440 pigment metabolic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046148 pigment biosynthetic process IEP HCCA
MF GO:0046406 magnesium protoporphyrin IX methyltransferase activity IEP HCCA
MF GO:0046915 transition metal ion transmembrane transporter activity IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065008 regulation of biological quality IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR001790 Ribosomal_L10P 42 132
No external refs found!