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  5. LOC_Os03g13380.1

LOC_Os03g13380.1 (LOC_Os03g13380)


Aliases : LOC_Os03g13380

Description : Transmembrane 9 superfamily member 3 OS=Arabidopsis thaliana (sp|q9zps7|tmn3_arath : 892.0)


Gene families : OG0000505 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000505_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g13380.1
Cluster HCCA: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00070p00145350 TMN1, AtTMN1,... Transmembrane 9 superfamily member 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AT1G08350 No alias Endomembrane protein 70 protein family 0.06 OrthoFinder output from all 47 species
AT1G10950 TMN1, AtTMN1 transmembrane nine 1 0.11 OrthoFinder output from all 47 species
AT1G14670 No alias Endomembrane protein 70 protein family 0.08 OrthoFinder output from all 47 species
AT2G01970 No alias Endomembrane protein 70 protein family 0.05 OrthoFinder output from all 47 species
AT5G37310 No alias Endomembrane protein 70 protein family 0.05 OrthoFinder output from all 47 species
Adi_g002017 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g079623 TMN1, AtTMN1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g083404 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g06723 TMN1, AtTMN1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g27302 TMN1, AtTMN1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g05940 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0033.g025094 No alias not classified & original description: CDS=143-1366 0.03 OrthoFinder output from all 47 species
Azfi_s0428.g069304 No alias not classified & original description: CDS=237-1763 0.03 OrthoFinder output from all 47 species
Azfi_s0509.g074704 TMN1, AtTMN1 not classified & original description: CDS=1-1740 0.07 OrthoFinder output from all 47 species
Azfi_s2385.g111052 No alias not classified & original description: CDS=238-1536 0.02 OrthoFinder output from all 47 species
Cba_g26284 TMN1, AtTMN1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g71218 TMN1, AtTMN1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.01G022200.1 Ceric.01G022200 not classified & original description: pacid=50590564... 0.04 OrthoFinder output from all 47 species
Ceric.10G052300.1 Ceric.10G052300 not classified & original description: pacid=50613376... 0.04 OrthoFinder output from all 47 species
Ceric.22G054000.1 Ceric.22G054000 not classified & original description: pacid=50613875... 0.09 OrthoFinder output from all 47 species
Ceric.26G022100.1 TMN1, AtTMN1,... not classified & original description: pacid=50599543... 0.08 OrthoFinder output from all 47 species
Ceric.34G054800.1 TMN1, AtTMN1,... not classified & original description: pacid=50624162... 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000459.14 No alias Transmembrane 9 superfamily member 3 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000459.15 No alias Transmembrane 9 superfamily member 4 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020780.24 No alias Transmembrane 9 superfamily member 2 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cre01.g024350 No alias Transmembrane 9 superfamily member 2 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Dac_g03775 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g08675 TMN1, AtTMN1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g08833 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g08865 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g10047 TMN1, AtTMN1 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g10048 TMN1, AtTMN1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g36626 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g05899 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g03853 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g08970 TMN1, AtTMN1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g21769 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g24030 TMN1, AtTMN1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01011574001 No alias Transmembrane 9 superfamily member 2 OS=Arabidopsis thaliana 0.1 OrthoFinder output from all 47 species
GSVIVT01023343001 TMN1, AtTMN1 Transmembrane 9 superfamily member 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Gb_02686 No alias Transmembrane 9 superfamily member 3 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_07212 TMN1, AtTMN1 Transmembrane 9 superfamily member 1 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Len_g07740 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g05549 TMN1, AtTMN1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_10430999g0010 No alias Transmembrane 9 superfamily member 2 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_10431134g0010 TMN1, AtTMN1 Transmembrane 9 superfamily member 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_481029g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Mp3g06160.1 No alias Transmembrane 9 superfamily member 2 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Mp3g07580.1 No alias Transmembrane 9 superfamily member 2 OS=Arabidopsis... 0.1 OrthoFinder output from all 47 species
Msp_g10740 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g10835 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Msp_g24435 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g02238 TMN1, AtTMN1 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g06736 TMN1, AtTMN1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g13358 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g12963 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g13530 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pp3c8_25240V3.1 Pp3c8_25240 transmembrane nine 1 0.02 OrthoFinder output from all 47 species
Ppi_g10846 TMN1, AtTMN1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005260 No alias not classified & original description: CDS=162-1730 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0112.g020786 TMN1, AtTMN1 not classified & original description: CDS=134-1804 0.05 OrthoFinder output from all 47 species
Smo163520 TMN1, AtTMN1 Transmembrane 9 superfamily member 1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Smo166118 No alias Transmembrane 9 superfamily member 2 OS=Arabidopsis thaliana 0.06 OrthoFinder output from all 47 species
Smo170330 No alias Transmembrane 9 superfamily member 2 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Solyc01g103930.3.1 TMN1, AtTMN1,... Transmembrane 9 superfamily member 1 OS=Arabidopsis... 0.11 OrthoFinder output from all 47 species
Solyc04g014570.3.1 Solyc04g014570 Transmembrane 9 superfamily member 3 OS=Arabidopsis... 0.08 OrthoFinder output from all 47 species
Solyc10g044480.2.1 TMN1, AtTMN1,... Transmembrane 9 superfamily member 1 OS=Arabidopsis... 0.07 OrthoFinder output from all 47 species
Solyc11g022540.3.1 TMN1, AtTMN1,... Transmembrane 9 superfamily member 1 OS=Arabidopsis... 0.12 OrthoFinder output from all 47 species
Spa_g11848 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g17201 TMN1, AtTMN1 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Spa_g19104 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g22300 TMN1, AtTMN1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g40885 TMN1, AtTMN1 not classified & original description: none 0.08 OrthoFinder output from all 47 species
Spa_g47696 TMN1, AtTMN1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g50972 TMN1, AtTMN1 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g14792 TMN1, AtTMN1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e000978_P002 Zm00001e000978 Transmembrane 9 superfamily member 2 OS=Arabidopsis... 0.14 OrthoFinder output from all 47 species
Zm00001e008994_P001 TMN1, AtTMN1,... Transmembrane 9 superfamily member 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e014799_P002 TMN1, AtTMN1,... Transmembrane 9 superfamily member 1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e038626_P002 Zm00001e038626 Transmembrane 9 superfamily member 2 OS=Arabidopsis... 0.09 OrthoFinder output from all 47 species
Zm00001e039502_P001 TMN1, AtTMN1,... Transmembrane 9 superfamily member 1 OS=Arabidopsis... 0.15 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004559 alpha-mannosidase activity IEP HCCA
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
BP GO:0006497 protein lipidation IEP HCCA
BP GO:0006505 GPI anchor metabolic process IEP HCCA
BP GO:0006506 GPI anchor biosynthetic process IEP HCCA
BP GO:0006643 membrane lipid metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0006661 phosphatidylinositol biosynthetic process IEP HCCA
BP GO:0006664 glycolipid metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0009247 glycolipid biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
MF GO:0015923 mannosidase activity IEP HCCA
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030118 clathrin coat IEP HCCA
CC GO:0030119 AP-type membrane coat adaptor complex IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030125 clathrin vesicle coat IEP HCCA
CC GO:0030126 COPI vesicle coat IEP HCCA
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP HCCA
CC GO:0030131 clathrin adaptor complex IEP HCCA
CC GO:0030132 clathrin coat of coated pit IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0045017 glycerolipid biosynthetic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046467 membrane lipid biosynthetic process IEP HCCA
BP GO:0046474 glycerophospholipid biosynthetic process IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
MF GO:0070569 uridylyltransferase activity IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1903509 liposaccharide metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR004240 EMP70 57 552
No external refs found!