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  5. LOC_Os03g06240.1

LOC_Os03g06240.1 (ECT4, LOC_Os03g06240)


Aliases : ECT4, LOC_Os03g06240

Description : methylation reader (ECT)


Gene families : OG0000330 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000330_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os03g06240.1

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00073360 ECT2,... No description available 0.03 OrthoFinder output from all 47 species
AT3G13460 ECT2 evolutionarily conserved C-terminal region 2 0.03 OrthoFinder output from all 47 species
Adi_g087071 ECT7 methylation reader *(ECT) & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g37060 ECT5 methylation reader *(ECT) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g12670 ECT5 methylation reader *(ECT) & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g06040 ECT5 methylation reader *(ECT) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g19226 ECT5 methylation reader *(ECT) & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g20530 ECT8 methylation reader *(ECT) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g38037 ECT8 methylation reader *(ECT) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g70631 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.19G077700.1 ECT7, Ceric.19G077700 methylation reader *(ECT) & original description:... 0.04 OrthoFinder output from all 47 species
Dac_g16306 ECT5 methylation reader *(ECT) & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g11046 ECT5 methylation reader *(ECT) & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01025494001 ECT2 No description available 0.02 OrthoFinder output from all 47 species
GSVIVT01036696001 ECT8 No description available 0.05 OrthoFinder output from all 47 species
Gb_17619 ECT2 methylation reader (ECT) 0.04 OrthoFinder output from all 47 species
Len_g18900 ECT5 methylation reader *(ECT) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g02026 ECT8 methylation reader *(ECT) & original description: none 0.06 OrthoFinder output from all 47 species
Lfl_g21015 ECT5 methylation reader *(ECT) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g22621 ECT5 methylation reader *(ECT) & original description: none 0.02 OrthoFinder output from all 47 species
MA_130754g0010 ECT2 methylation reader (ECT) 0.02 OrthoFinder output from all 47 species
Msp_g14226 ECT8 methylation reader *(ECT) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g03142 ECT7 methylation reader *(ECT) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g25270 ECT8 methylation reader *(ECT) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g35979 No alias methylation reader *(ECT) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g028860.3.1 ECT2, Solyc01g028860 methylation reader (ECT) 0.07 OrthoFinder output from all 47 species
Solyc01g103540.3.1 ECT11, Solyc01g103540 methylation reader (ECT) 0.08 OrthoFinder output from all 47 species
Spa_g02267 ECT7 methylation reader *(ECT) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g05381 ECT5 methylation reader *(ECT) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g46273 ECT5 methylation reader *(ECT) & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e021575_P001 ECT5, Zm00001e021575 methylation reader (ECT) 0.03 OrthoFinder output from all 47 species
Zm00001e021892_P001 ECT7, Zm00001e021892 methylation reader (ECT) 0.03 OrthoFinder output from all 47 species
Zm00001e039003_P004 ECT2, Zm00001e039003 methylation reader (ECT) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0004455 ketol-acid reductoisomerase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006457 protein folding IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009081 branched-chain amino acid metabolic process IEP HCCA
BP GO:0009082 branched-chain amino acid biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR007275 YTH_domain 466 603
No external refs found!