Aliases : PUM1, APUM1, LOC_Os02g57390
Description : Pumilio homolog 1 OS=Arabidopsis thaliana (sp|q9zw07|pum1_arath : 743.0)
Gene families : OG0000583 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000583_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00025p00181800 | PUM5, APUM5,... | Pumilio homolog 5 OS=Arabidopsis thaliana | 0.05 | OrthoFinder output from all 47 species | |
AT3G20250 | PUM5, APUM5 | pumilio 5 | 0.05 | OrthoFinder output from all 47 species | |
Adi_g010436 | APUM2, PUM2 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Adi_g075414 | APUM2, PUM2 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ceric.18G068300.1 | APUM2, PUM2,... | not classified & original description: pacid=50621207... | 0.03 | OrthoFinder output from all 47 species | |
Gb_39566 | PUM5, APUM5 | Pumilio homolog 5 OS=Arabidopsis thaliana... | 0.03 | OrthoFinder output from all 47 species | |
Len_g21556 | PUM1, APUM1 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Ore_g02142 | APUM4, PUM4 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Pp3c16_13520V3.1 | Pp3c16_13520 | pumilio 2 | 0.01 | OrthoFinder output from all 47 species | |
Solyc03g123980.4.1 | PUM5, APUM5,... | Pumilio homolog 5 OS=Arabidopsis thaliana... | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e016242_P002 | PUM1, APUM1,... | Pumilio homolog 4 OS=Arabidopsis thaliana... | 0.09 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003723 | RNA binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003824 | catalytic activity | IEP | HCCA |
MF | GO:0003993 | acid phosphatase activity | IEP | HCCA |
MF | GO:0004175 | endopeptidase activity | IEP | HCCA |
MF | GO:0004190 | aspartic-type endopeptidase activity | IEP | HCCA |
MF | GO:0004197 | cysteine-type endopeptidase activity | IEP | HCCA |
MF | GO:0004672 | protein kinase activity | IEP | HCCA |
MF | GO:0005215 | transporter activity | IEP | HCCA |
MF | GO:0005216 | monoatomic ion channel activity | IEP | HCCA |
BP | GO:0006468 | protein phosphorylation | IEP | HCCA |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
BP | GO:0006810 | transport | IEP | HCCA |
BP | GO:0006886 | intracellular protein transport | IEP | HCCA |
BP | GO:0008104 | protein localization | IEP | HCCA |
BP | GO:0008150 | biological_process | IEP | HCCA |
BP | GO:0008152 | metabolic process | IEP | HCCA |
MF | GO:0008289 | lipid binding | IEP | HCCA |
BP | GO:0009987 | cellular process | IEP | HCCA |
BP | GO:0015031 | protein transport | IEP | HCCA |
MF | GO:0015399 | primary active transmembrane transporter activity | IEP | HCCA |
BP | GO:0016485 | protein processing | IEP | HCCA |
BP | GO:0016567 | protein ubiquitination | IEP | HCCA |
MF | GO:0016740 | transferase activity | IEP | HCCA |
MF | GO:0016787 | hydrolase activity | IEP | HCCA |
MF | GO:0016791 | phosphatase activity | IEP | HCCA |
BP | GO:0019538 | protein metabolic process | IEP | HCCA |
MF | GO:0022857 | transmembrane transporter activity | IEP | HCCA |
BP | GO:0032446 | protein modification by small protein conjugation | IEP | HCCA |
BP | GO:0033036 | macromolecule localization | IEP | HCCA |
BP | GO:0036211 | protein modification process | IEP | HCCA |
MF | GO:0042578 | phosphoric ester hydrolase activity | IEP | HCCA |
MF | GO:0042626 | ATPase-coupled transmembrane transporter activity | IEP | HCCA |
BP | GO:0043170 | macromolecule metabolic process | IEP | HCCA |
BP | GO:0043412 | macromolecule modification | IEP | HCCA |
BP | GO:0044238 | primary metabolic process | IEP | HCCA |
BP | GO:0045184 | establishment of protein localization | IEP | HCCA |
BP | GO:0051179 | localization | IEP | HCCA |
BP | GO:0051234 | establishment of localization | IEP | HCCA |
BP | GO:0051604 | protein maturation | IEP | HCCA |
BP | GO:0051641 | cellular localization | IEP | HCCA |
BP | GO:0055085 | transmembrane transport | IEP | HCCA |
MF | GO:0070001 | aspartic-type peptidase activity | IEP | HCCA |
BP | GO:0070727 | cellular macromolecule localization | IEP | HCCA |
BP | GO:0071586 | CAAX-box protein processing | IEP | HCCA |
BP | GO:0071702 | organic substance transport | IEP | HCCA |
BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
BP | GO:0071705 | nitrogen compound transport | IEP | HCCA |
MF | GO:0140096 | catalytic activity, acting on a protein | IEP | HCCA |
BP | GO:1901564 | organonitrogen compound metabolic process | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR001313 | Pumilio_RNA-bd_rpt | 886 | 917 |
IPR001313 | Pumilio_RNA-bd_rpt | 776 | 809 |
IPR001313 | Pumilio_RNA-bd_rpt | 852 | 881 |
IPR001313 | Pumilio_RNA-bd_rpt | 740 | 771 |
IPR001313 | Pumilio_RNA-bd_rpt | 812 | 844 |
IPR001313 | Pumilio_RNA-bd_rpt | 668 | 701 |
IPR001313 | Pumilio_RNA-bd_rpt | 934 | 960 |
IPR001313 | Pumilio_RNA-bd_rpt | 704 | 736 |
IPR012940 | NABP | 302 | 665 |
No external refs found! |