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  5. LOC_Os02g48010.1

LOC_Os02g48010.1 (LINC1, LOC_Os02g48010)


Aliases : LINC1, LOC_Os02g48010

Description : CRWN nuclear lamina lamin-like protein


Gene families : OG0002096 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002096_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g48010.1
Cluster HCCA: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00252300 LINC1,... Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear... 0.03 OrthoFinder output from all 47 species
AMTR_s00044p00204550 LINC4,... Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear... 0.04 OrthoFinder output from all 47 species
AT1G13220 LINC2 nuclear matrix constituent protein-related 0.02 OrthoFinder output from all 47 species
AT1G67230 LINC1 little nuclei1 0.04 OrthoFinder output from all 47 species
AT1G68790 LINC3 little nuclei3 0.09 OrthoFinder output from all 47 species
AT5G65770 LINC4 little nuclei4 0.03 OrthoFinder output from all 47 species
AT5G65780 ATBCAT-5 branched-chain amino acid aminotransferase 5 /... 0.06 OrthoFinder output from all 47 species
Adi_g055294 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
Als_g29067 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
Aob_g07969 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.05 OrthoFinder output from all 47 species
Ceric.07G023500.1 LINC2, Ceric.07G023500 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
Ceric.31G070800.1 LINC2, Ceric.31G070800 nuclear lamina lamin-like protein *(CRWN) & original... 0.06 OrthoFinder output from all 47 species
Dcu_g09858 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
Dde_g12831 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01007428001 LINC4 Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear... 0.04 OrthoFinder output from all 47 species
GSVIVT01011972001 LINC3 Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear... 0.05 OrthoFinder output from all 47 species
GSVIVT01031076001 LINC1 Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear... 0.07 OrthoFinder output from all 47 species
Gb_03736 LINC2 CRWN nuclear lamina lamin-like protein 0.03 OrthoFinder output from all 47 species
Len_g37667 LINC1 nuclear lamina lamin-like protein *(CRWN) & original... 0.02 OrthoFinder output from all 47 species
Lfl_g03466 LINC3 nuclear lamina lamin-like protein *(CRWN) & original... 0.04 OrthoFinder output from all 47 species
Lfl_g13028 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.02 OrthoFinder output from all 47 species
Mp3g21160.1 LINC2 CRWN nuclear lamina lamin-like protein 0.02 OrthoFinder output from all 47 species
Msp_g42740 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
Nbi_g03849 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.02 OrthoFinder output from all 47 species
Nbi_g10182 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
Ore_g19012 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g19679 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
Ore_g28255 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.02 OrthoFinder output from all 47 species
Pir_g40515 LINC1 nuclear lamina lamin-like protein *(CRWN) & original... 0.02 OrthoFinder output from all 47 species
Sam_g14580 No alias nuclear lamina lamin-like protein *(CRWN) & original... 0.04 OrthoFinder output from all 47 species
Solyc02g089800.3.1 LINC1, Solyc02g089800 CRWN nuclear lamina lamin-like protein 0.12 OrthoFinder output from all 47 species
Solyc02g091960.4.1 LINC4, Solyc02g091960 CRWN nuclear lamina lamin-like protein 0.11 OrthoFinder output from all 47 species
Solyc03g045050.4.1 LINC1, Solyc03g045050 CRWN nuclear lamina lamin-like protein 0.09 OrthoFinder output from all 47 species
Spa_g26205 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e019705_P002 LINC4, Zm00001e019705 CRWN nuclear lamina lamin-like protein 0.06 OrthoFinder output from all 47 species
Zm00001e023357_P001 LINC1, Zm00001e023357 CRWN nuclear lamina lamin-like protein 0.15 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0002097 tRNA wobble base modification IEP HCCA
BP GO:0002100 tRNA wobble adenosine to inosine editing IEP HCCA
MF GO:0004000 adenosine deaminase activity IEP HCCA
CC GO:0005694 chromosome IEP HCCA
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006382 adenosine to inosine editing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008251 tRNA-specific adenosine deaminase activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016553 base conversion or substitution editing IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
MF GO:0019239 deaminase activity IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
CC GO:0034457 Mpp10 complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!