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  5. LOC_Os02g40900.1

LOC_Os02g40900.1 (LOC_Os02g40900)


Aliases : LOC_Os02g40900

Description : no hits & (original description: none)


Gene families : OG0004343 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004343_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g40900.1
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00067p00070310 evm_27.TU.AmTr_v1... No description available 0.02 OrthoFinder output from all 47 species
GSVIVT01023509001 No alias No description available 0.11 OrthoFinder output from all 47 species
Msp_g00538 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g06685 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc05g055010.4.1 Solyc05g055010 no hits & (original description: none) 0.14 OrthoFinder output from all 47 species
Zm00001e023018_P002 Zm00001e023018 no hits & (original description: none) 0.21 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0001671 ATPase activator activity IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005681 spliceosomal complex IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0051087 chaperone binding IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
MF GO:0140677 molecular function activator activity IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 128 198
No external refs found!