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  5. LOC_Os02g40830.1

LOC_Os02g40830.1 (LOC_Os02g40830)


Aliases : LOC_Os02g40830

Description : subunit beta of succinyl-CoA ligase heterodimer


Gene families : OG0004314 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004314_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g40830.1
Cluster HCCA: Cluster_111

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00067p00119600 evm_27.TU.AmTr_v1... Cellular respiration.tricarboxylic acid... 0.02 OrthoFinder output from all 47 species
AT2G20420 No alias ATP citrate lyase (ACL) family protein 0.13 OrthoFinder output from all 47 species
Adi_g018768 No alias subunit beta of succinyl-CoA ligase heterodimer &... 0.04 OrthoFinder output from all 47 species
Ala_g14147 No alias subunit beta of succinyl-CoA ligase heterodimer &... 0.02 OrthoFinder output from all 47 species
Aob_g01578 No alias subunit beta of succinyl-CoA ligase heterodimer &... 0.02 OrthoFinder output from all 47 species
Aop_g01709 No alias subunit beta of succinyl-CoA ligase heterodimer &... 0.02 OrthoFinder output from all 47 species
Azfi_s0073.g037105 No alias subunit beta of succinyl-CoA ligase heterodimer &... 0.07 OrthoFinder output from all 47 species
Cba_g00954 No alias subunit beta of succinyl-CoA ligase heterodimer &... 0.03 OrthoFinder output from all 47 species
Ceric.13G077600.1 Ceric.13G077600 subunit beta of succinyl-CoA ligase heterodimer &... 0.09 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001376.28 No alias Cellular respiration.tricarboxylic acid... 0.01 OrthoFinder output from all 47 species
Cre17.g703700 No alias Cellular respiration.tricarboxylic acid... 0.02 OrthoFinder output from all 47 species
Dcu_g04664 No alias subunit beta of succinyl-CoA ligase heterodimer &... 0.05 OrthoFinder output from all 47 species
Dde_g20883 No alias subunit beta of succinyl-CoA ligase heterodimer &... 0.02 OrthoFinder output from all 47 species
Ehy_g02522 No alias subunit beta of succinyl-CoA ligase heterodimer &... 0.02 OrthoFinder output from all 47 species
GSVIVT01028373001 No alias Cellular respiration.tricarboxylic acid... 0.04 OrthoFinder output from all 47 species
Gb_21325 No alias subunit beta of succinyl-CoA ligase heterodimer 0.07 OrthoFinder output from all 47 species
Lfl_g24989 No alias subunit beta of succinyl-CoA ligase heterodimer &... 0.02 OrthoFinder output from all 47 species
MA_161904g0010 No alias subunit beta of succinyl-CoA ligase heterodimer 0.02 OrthoFinder output from all 47 species
Mp1g04210.1 No alias subunit beta of succinyl-CoA ligase heterodimer 0.15 OrthoFinder output from all 47 species
Msp_g04849 No alias subunit beta of succinyl-CoA ligase heterodimer &... 0.06 OrthoFinder output from all 47 species
Nbi_g02039 No alias subunit beta of succinyl-CoA ligase heterodimer &... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0130.g022033 No alias subunit beta of succinyl-CoA ligase heterodimer &... 0.04 OrthoFinder output from all 47 species
Smo419323 No alias Cellular respiration.tricarboxylic acid... 0.1 OrthoFinder output from all 47 species
Solyc06g083790.3.1 Solyc06g083790 subunit beta of succinyl-CoA ligase heterodimer 0.13 OrthoFinder output from all 47 species
Tin_g05127 No alias subunit beta of succinyl-CoA ligase heterodimer &... 0.05 OrthoFinder output from all 47 species
Zm00001e015140_P001 Zm00001e015140 subunit beta of succinyl-CoA ligase heterodimer 0.04 OrthoFinder output from all 47 species
Zm00001e023009_P001 Zm00001e023009 subunit beta of succinyl-CoA ligase heterodimer 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) IEP HCCA
CC GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEP HCCA
CC GO:0000502 proteasome complex IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005261 monoatomic cation channel activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
CC GO:0005783 endoplasmic reticulum IEP HCCA
BP GO:0006099 tricarboxylic acid cycle IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0006810 transport IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
BP GO:0009894 regulation of catabolic process IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015252 proton channel activity IEP HCCA
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0019637 organophosphate metabolic process IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030126 COPI vesicle coat IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP HCCA
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0042176 regulation of protein catabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
CC GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) IEP HCCA
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0098798 mitochondrial protein-containing complex IEP HCCA
CC GO:0098800 inner mitochondrial membrane protein complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901135 carbohydrate derivative metabolic process IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
CC GO:1905368 peptidase complex IEP HCCA
CC GO:1905369 endopeptidase complex IEP HCCA
InterPro domains Description Start Stop
IPR013650 ATP-grasp_succ-CoA_synth-type 29 237
IPR005811 CoA_ligase 297 417
No external refs found!