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  5. LOC_Os02g38260.1

LOC_Os02g38260.1 (LOC_Os02g38260)


Aliases : LOC_Os02g38260

Description : no description available(sp|c0hla0|gh5fp_chaob : 355.0)


Gene families : OG0002519 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002519_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g38260.1
Cluster HCCA: Cluster_149

Target Alias Description ECC score Gene Family Method Actions
AT1G13130 No alias Cellulase (glycosyl hydrolase family 5) protein 0.03 OrthoFinder output from all 47 species
AT3G26140 No alias Cellulase (glycosyl hydrolase family 5) protein 0.03 OrthoFinder output from all 47 species
Aob_g20980 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0349.g066500 No alias not classified & original description: CDS=1-1677 0.06 OrthoFinder output from all 47 species
Cba_g56869 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ceric.21G063600.1 Ceric.21G063600 not classified & original description: pacid=50603932... 0.03 OrthoFinder output from all 47 species
Dcu_g01667 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g47060 No alias not classified & original description: none 0.1 OrthoFinder output from all 47 species
GSVIVT01019433001 No alias No description available 0.03 OrthoFinder output from all 47 species
GSVIVT01019434001 No alias No description available 0.07 OrthoFinder output from all 47 species
GSVIVT01019436001 No alias No description available 0.06 OrthoFinder output from all 47 species
Gb_20405 No alias no description available(sp|c0hla0|gh5fp_chaob : 373.0) 0.03 OrthoFinder output from all 47 species
Gb_20519 No alias no description available(sp|c0hla0|gh5fp_chaob : 178.0) 0.03 OrthoFinder output from all 47 species
Gb_32318 No alias no description available(sp|c0hla0|gh5fp_chaob : 470.0) 0.05 OrthoFinder output from all 47 species
Len_g14860 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10432675g0010 No alias no description available(sp|c0hla0|gh5fp_chaob : 232.0) 0.02 OrthoFinder output from all 47 species
MA_4391326g0010 No alias no description available(sp|c0hla0|gh5fp_chaob : 81.3) 0.03 OrthoFinder output from all 47 species
MA_8507901g0010 No alias no description available(sp|c0hla0|gh5fp_chaob : 513.0) 0.03 OrthoFinder output from all 47 species
Msp_g31479 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g10993 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g17014 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc08g081720.4.1 Solyc08g081720 no description available(sp|c0hla0|gh5fp_chaob : 383.0) 0.11 OrthoFinder output from all 47 species
Zm00001e007796_P001 Zm00001e007796 no description available(sp|c0hla0|gh5fp_chaob : 285.0) 0.13 OrthoFinder output from all 47 species
Zm00001e022886_P001 Zm00001e022886 no description available(sp|c0hla0|gh5fp_chaob : 334.0) 0.12 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006417 regulation of translation IEP HCCA
BP GO:0009890 negative regulation of biosynthetic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010608 post-transcriptional regulation of gene expression IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP HCCA
MF GO:0016840 carbon-nitrogen lyase activity IEP HCCA
MF GO:0016843 amine-lyase activity IEP HCCA
MF GO:0016844 strictosidine synthase activity IEP HCCA
BP GO:0017148 negative regulation of translation IEP HCCA
MF GO:0030597 RNA glycosylase activity IEP HCCA
MF GO:0030598 rRNA N-glycosylase activity IEP HCCA
BP GO:0031324 negative regulation of cellular metabolic process IEP HCCA
BP GO:0031327 negative regulation of cellular biosynthetic process IEP HCCA
BP GO:0034248 regulation of amide metabolic process IEP HCCA
BP GO:0034249 negative regulation of amide metabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048523 negative regulation of cellular process IEP HCCA
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051248 negative regulation of protein metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140102 catalytic activity, acting on a rRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP HCCA
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001547 Glyco_hydro_5 67 352
No external refs found!