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  5. LOC_Os02g09450.1

LOC_Os02g09450.1 (SVL5, LOC_Os02g09450)


Aliases : SVL5, LOC_Os02g09450

Description : Glycerophosphodiester phosphodiesterase GDPDL7 OS=Arabidopsis thaliana (sp|q9lvn0|gpdl7_arath : 699.0)


Gene families : OG0002387 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002387_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g09450.1
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00055p00174750 GPDL2, SHV3,... Glycerophosphodiester phosphodiesterase GDPDL3... 0.03 OrthoFinder output from all 47 species
AMTR_s00252p00015420 SVL4,... Glycerophosphodiester phosphodiesterase GDPDL6... 0.2 OrthoFinder output from all 47 species
AT3G20520 SVL3 SHV3-like 3 0.04 OrthoFinder output from all 47 species
AT4G26690 GPDL2, SHV3, MRH5 PLC-like phosphodiesterase family protein 0.06 OrthoFinder output from all 47 species
AT5G58050 SVL4 SHV3-like 4 0.08 OrthoFinder output from all 47 species
AT5G58170 SVL5 SHV3-like 5 0.06 OrthoFinder output from all 47 species
Adi_g059201 SVL5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g07493 SVL5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g14503 SVL5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08832 SVL4 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0064.g035674 SVL5 not classified & original description: CDS=1-2358 0.05 OrthoFinder output from all 47 species
Ceric.08G056600.1 SVL5, Ceric.08G056600 not classified & original description: pacid=50637619... 0.04 OrthoFinder output from all 47 species
Ceric.17G055700.1 Ceric.17G055700 not classified & original description: pacid=50617584... 0.03 OrthoFinder output from all 47 species
Dac_g18847 SVL4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g31142 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01003731001 SVL5 Glycerophosphodiester phosphodiesterase GDPDL6... 0.13 OrthoFinder output from all 47 species
Gb_18319 SVL1 Glycerophosphodiester phosphodiesterase GDPDL4... 0.03 OrthoFinder output from all 47 species
LOC_Os04g39610.1 GPDL2, SHV3,... Glycerophosphodiester phosphodiesterase GDPDL4... 0.04 OrthoFinder output from all 47 species
Lfl_g24535 SVL4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_10434415g0020 SNC4 Protein SUPPRESSOR OF NPR1-1 CONSTITUTIVE 4... 0.03 OrthoFinder output from all 47 species
MA_10435620g0010 SVL1 Protein SUPPRESSOR OF NPR1-1 CONSTITUTIVE 4... 0.02 OrthoFinder output from all 47 species
Mp8g07940.1 SVL5 Glycerophosphodiester phosphodiesterase GDPDL7... 0.02 OrthoFinder output from all 47 species
Msp_g26126 SVL5 not classified & original description: none 0.01 OrthoFinder output from all 47 species
Nbi_g10791 SVL5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g43132 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g05893 SVL5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0122.g021443 SVL5 not classified & original description: CDS=22-1383 0.02 OrthoFinder output from all 47 species
Solyc02g014490.4.1 SVL4, Solyc02g014490 Glycerophosphodiester phosphodiesterase GDPDL7... 0.11 OrthoFinder output from all 47 species
Solyc02g014530.4.1 SVL4, Solyc02g014530 Glycerophosphodiester phosphodiesterase GDPDL6... 0.1 OrthoFinder output from all 47 species
Solyc07g065120.3.1 SVL1, Solyc07g065120 Glycerophosphodiester phosphodiesterase GDPDL4... 0.04 OrthoFinder output from all 47 species
Solyc12g014570.2.1 SVL1, Solyc12g014570 Glycerophosphodiester phosphodiesterase GDPDL4... 0.03 OrthoFinder output from all 47 species
Spa_g21490 SVL5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g40260 SVL1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e025069_P001 SVL5, Zm00001e025069 Glycerophosphodiester phosphodiesterase GDPDL7... 0.18 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0006629 lipid metabolic process IEA Interproscan
MF GO:0008081 phosphoric diester hydrolase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003779 actin binding IEP HCCA
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
MF GO:0004427 inorganic diphosphate phosphatase activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
MF GO:0004650 polygalacturonase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004857 enzyme inhibitor activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
MF GO:0005509 calcium ion binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016759 cellulose synthase activity IEP HCCA
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides IEP HCCA
MF GO:0016840 carbon-nitrogen lyase activity IEP HCCA
MF GO:0016843 amine-lyase activity IEP HCCA
MF GO:0016844 strictosidine synthase activity IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
BP GO:0030243 cellulose metabolic process IEP HCCA
BP GO:0030244 cellulose biosynthetic process IEP HCCA
MF GO:0030570 pectate lyase activity IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
InterPro domains Description Start Stop
IPR030395 GP_PDE_dom 362 651
No external refs found!