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  5. LOC_Os02g08300.1

LOC_Os02g08300.1 (RAD23B, RAD23, LOC_Os02g08300)


Aliases : RAD23B, RAD23, LOC_Os02g08300

Description : shuttle protein (RAD23)


Gene families : OG0001068 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001068_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g08300.1

Target Alias Description ECC score Gene Family Method Actions
AT1G16190 RAD23A Rad23 UV excision repair protein family 0.02 OrthoFinder output from all 47 species
Adi_g123403 RAD23D ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.03 OrthoFinder output from all 47 species
Aop_g07923 RAD23B, RAD23 ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.03 OrthoFinder output from all 47 species
Aop_g10404 RAD23B, RAD23 ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.02 OrthoFinder output from all 47 species
Aspi01Gene27126.t1 RAD23B, RAD23,... ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.02 OrthoFinder output from all 47 species
Azfi_s0179.g056277 RAD23D ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.02 OrthoFinder output from all 47 species
Cba_g67782 RAD23A ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.02 OrthoFinder output from all 47 species
Ceric.13G041900.1 RAD23B, RAD23,... ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01016076001 RAD23B, RAD23 Ubiquitin receptor RAD23b OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Gb_20110 RAD23B, RAD23 shuttle protein (RAD23) 0.02 OrthoFinder output from all 47 species
Ore_g27319 RAD23-3, RAD23C ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.02 OrthoFinder output from all 47 species
Pir_g08671 RAD23B, RAD23 ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.02 OrthoFinder output from all 47 species
Sam_g37047 No alias ubiquitin-proteasome shuttle factor *(RAD23) & original... 0.02 OrthoFinder output from all 47 species
Solyc02g063130.4.1 RAD23-3, RAD23C,... shuttle protein (RAD23) 0.02 OrthoFinder output from all 47 species
Solyc03g117780.2.1 RAD23B, RAD23,... shuttle protein (RAD23) 0.02 OrthoFinder output from all 47 species
Tin_g08949 RAD23-3, RAD23C ubiquiTin-proteasome shuttle factor *(RAD23) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e025088_P005 RAD23B, RAD23,... shuttle protein (RAD23) 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006289 nucleotide-excision repair IEA Interproscan
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000176 nuclear exosome (RNase complex) IEP HCCA
CC GO:0000178 exosome (RNase complex) IEP HCCA
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0043015 gamma-tubulin binding IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
CC GO:1905354 exoribonuclease complex IEP HCCA
InterPro domains Description Start Stop
IPR000626 Ubiquitin-like_dom 3 76
IPR015360 XPC-bd 245 300
IPR015940 UBA 326 362
IPR015940 UBA 147 184
No external refs found!