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  5. LOC_Os02g04660.1

LOC_Os02g04660.1 (ATPRMT5, PRMT5, SKB1,...)


Aliases : ATPRMT5, PRMT5, SKB1, LOC_Os02g04660

Description : arginine methyltransferase (PRMT5). histone methylase (CAU1)


Gene families : OG0005523 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005523_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os02g04660.1
Cluster HCCA: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00221910 ATPRMT5, PRMT5,... External stimuli response.drought.stomatal closure... 0.03 OrthoFinder output from all 47 species
AT4G31120 ATPRMT5, PRMT5, SKB1 SHK1 binding protein 1 0.06 OrthoFinder output from all 47 species
Aev_g01418 ATPRMT5, PRMT5, SKB1 histone methylase *(CAU1/PRMT5) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g21254 ATPRMT5, PRMT5, SKB1 histone methylase *(CAU1/PRMT5) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g20316 ATPRMT5, PRMT5, SKB1 histone methylase *(CAU1/PRMT5) & original description: none 0.02 OrthoFinder output from all 47 species
Als_g32065 ATPRMT5, PRMT5, SKB1 histone methylase *(CAU1/PRMT5) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g04582 ATPRMT5, PRMT5, SKB1 histone methylase *(CAU1/PRMT5) & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene23838.t1 ATPRMT5, PRMT5,... histone methylase *(CAU1/PRMT5) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0035.g025556 ATPRMT5, PRMT5, SKB1 histone methylase *(CAU1/PRMT5) & original description:... 0.03 OrthoFinder output from all 47 species
Cba_g17288 ATPRMT5, PRMT5, SKB1 histone methylase *(CAU1/PRMT5) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.27G021300.1 ATPRMT5, PRMT5,... histone methylase *(CAU1/PRMT5) & original description:... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021350.20 ATPRMT5, PRMT5, SKB1 External stimuli response.drought.stomatal closure... 0.01 OrthoFinder output from all 47 species
Cre03.g176550 ATPRMT5, PRMT5, SKB1 External stimuli response.drought.stomatal closure... 0.01 OrthoFinder output from all 47 species
Dac_g02860 ATPRMT5, PRMT5, SKB1 histone methylase *(CAU1/PRMT5) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g04878 ATPRMT5, PRMT5, SKB1 histone methylase *(CAU1/PRMT5) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g01504 ATPRMT5, PRMT5, SKB1 histone methylase *(CAU1/PRMT5) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g30397 ATPRMT5, PRMT5, SKB1 histone methylase *(CAU1/PRMT5) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01035593001 ATPRMT5, PRMT5, SKB1 External stimuli response.drought.stomatal closure... 0.08 OrthoFinder output from all 47 species
Gb_23660 ATPRMT5, PRMT5, SKB1 arginine methyltransferase (PRMT5). histone methylase (CAU1) 0.08 OrthoFinder output from all 47 species
MA_7691823g0010 ATPRMT5, PRMT5, SKB1 arginine methyltransferase (PRMT5). histone methylase (CAU1) 0.04 OrthoFinder output from all 47 species
Mp4g20270.1 ATPRMT5, PRMT5, SKB1 arginine methyltransferase (PRMT5). histone methylase (CAU1) 0.11 OrthoFinder output from all 47 species
Msp_g15862 ATPRMT5, PRMT5, SKB1 histone methylase *(CAU1/PRMT5) & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g01710 ATPRMT5, PRMT5, SKB1 histone methylase *(CAU1/PRMT5) & original description: none 0.02 OrthoFinder output from all 47 species
Smo183431 ATPRMT5, PRMT5, SKB1 External stimuli response.drought.stomatal closure... 0.07 OrthoFinder output from all 47 species
Solyc08g005970.3.1 ATPRMT5, PRMT5,... arginine methyltransferase (PRMT5). histone methylase (CAU1) 0.04 OrthoFinder output from all 47 species
Spa_g41746 ATPRMT5, PRMT5, SKB1 histone methylase *(CAU1/PRMT5) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e013628_P002 ATPRMT5, PRMT5,... arginine methyltransferase (PRMT5). histone methylase (CAU1) 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000176 nuclear exosome (RNase complex) IEP HCCA
CC GO:0000178 exosome (RNase complex) IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006289 nucleotide-excision repair IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0010498 proteasomal protein catabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0030163 protein catabolic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
CC GO:1905354 exoribonuclease complex IEP HCCA
InterPro domains Description Start Stop
IPR035075 PRMT5 309 478
IPR035248 PRMT5_C 481 647
IPR035247 PRMT5_TIM 41 303
No external refs found!