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  5. LOC_Os01g67880.1

LOC_Os01g67880.1 (VPS53, HIT1, ATVPS53,...)


Aliases : VPS53, HIT1, ATVPS53, LOC_Os01g67880

Description : component VPS53/HIT1 of GARP/EARP (Golgi-/Endosome-Associated-Retrograde-Protein) complexes


Gene families : OG0003936 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003936_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: LOC_Os01g67880.1

Target Alias Description ECC score Gene Family Method Actions
AT1G50500 VPS53, HIT1, ATVPS53 Membrane trafficking VPS53 family protein 0.07 OrthoFinder output from all 47 species
Aev_g06143 VPS53, HIT1, ATVPS53 component *(VPS53/HIT1) of GARP/EARP... 0.07 OrthoFinder output from all 47 species
Cba_g01241 VPS53, HIT1, ATVPS53 component *(VPS53/HIT1) of GARP/EARP... 0.02 OrthoFinder output from all 47 species
Ceric.34G024900.1 VPS53, HIT1,... component *(VPS53/HIT1) of GARP/EARP... 0.08 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020554.46 VPS53, HIT1, ATVPS53 Vesicle trafficking.target membrane tethering.GARP/EARP... 0.01 OrthoFinder output from all 47 species
Cre06.g259600 VPS53, HIT1, ATVPS53 Vesicle trafficking.target membrane tethering.GARP/EARP... 0.02 OrthoFinder output from all 47 species
Dcu_g22740 VPS53, HIT1, ATVPS53 component *(VPS53/HIT1) of GARP/EARP... 0.1 OrthoFinder output from all 47 species
Ehy_g01626 VPS53, HIT1, ATVPS53 component *(VPS53/HIT1) of GARP/EARP... 0.02 OrthoFinder output from all 47 species
GSVIVT01016094001 VPS53, HIT1, ATVPS53 Vesicle trafficking.target membrane tethering.GARP/EARP... 0.05 OrthoFinder output from all 47 species
Gb_31032 VPS53, HIT1, ATVPS53 component VPS53/HIT1 of GARP/EARP... 0.02 OrthoFinder output from all 47 species
Len_g14691 VPS53, HIT1, ATVPS53 component *(VPS53/HIT1) of GARP/EARP... 0.02 OrthoFinder output from all 47 species
Lfl_g04212 VPS53, HIT1, ATVPS53 component *(VPS53/HIT1) of GARP/EARP... 0.04 OrthoFinder output from all 47 species
Mp8g18200.1 VPS53, HIT1, ATVPS53 component VPS53/HIT1 of GARP/EARP... 0.06 OrthoFinder output from all 47 species
Sam_g15917 No alias component *(VPS53/HIT1) of GARP/EARP... 0.06 OrthoFinder output from all 47 species
Solyc04g049490.3.1 VPS53, HIT1,... component VPS53/HIT1 of GARP/EARP... 0.07 OrthoFinder output from all 47 species
Tin_g01215 VPS53, HIT1, ATVPS53 component *(VPS53/HIT1) of GARP/EARP... 0.03 OrthoFinder output from all 47 species
Zm00001e018920_P001 VPS53, HIT1,... component VPS53/HIT1 of GARP/EARP... 0.11 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000030 mannosyltransferase activity IEP HCCA
MF GO:0004376 glycolipid mannosyltransferase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006497 protein lipidation IEP HCCA
BP GO:0006505 GPI anchor metabolic process IEP HCCA
BP GO:0006506 GPI anchor biosynthetic process IEP HCCA
BP GO:0006643 membrane lipid metabolic process IEP HCCA
BP GO:0006644 phospholipid metabolic process IEP HCCA
BP GO:0006650 glycerophospholipid metabolic process IEP HCCA
BP GO:0006661 phosphatidylinositol biosynthetic process IEP HCCA
BP GO:0006664 glycolipid metabolic process IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008610 lipid biosynthetic process IEP HCCA
BP GO:0008654 phospholipid biosynthetic process IEP HCCA
BP GO:0009247 glycolipid biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
CC GO:0017119 Golgi transport complex IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0044255 cellular lipid metabolic process IEP HCCA
BP GO:0045017 glycerolipid biosynthetic process IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046467 membrane lipid biosynthetic process IEP HCCA
BP GO:0046474 glycerophospholipid biosynthetic process IEP HCCA
BP GO:0046486 glycerolipid metabolic process IEP HCCA
BP GO:0046488 phosphatidylinositol metabolic process IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0051751 alpha-1,4-mannosyltransferase activity IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1903509 liposaccharide metabolic process IEP HCCA

No InterPro domains available for this sequence

No external refs found!