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Aliases : PTAC10, PDE312, LOC_Os01g67570
Description : PAP3/TAC10 cofactor of plastid-encoded RNA polymerase
Gene families : OG0006411 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006411_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00354p00009120 | PTAC10, PDE312,... | RNA biosynthesis.organelle machineries.RNA polymerase... | 0.03 | OrthoFinder output from all 47 species | |
| AT3G48500 | PTAC10, PDE312 | Nucleic acid-binding, OB-fold-like protein | 0.18 | OrthoFinder output from all 47 species | |
| Adi_g052271 | PTAC10, PDE312 | cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... | 0.04 | OrthoFinder output from all 47 species | |
| Aob_g16864 | PTAC10, PDE312 | cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... | 0.01 | OrthoFinder output from all 47 species | |
| Aop_g07043 | PTAC10, PDE312 | cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0353.g066638 | PTAC10, PDE312 | cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... | 0.04 | OrthoFinder output from all 47 species | |
| Cba_g04661 | PTAC10, PDE312 | cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.02G035300.1 | PTAC10, PDE312,... | cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... | 0.05 | OrthoFinder output from all 47 species | |
| Cre07.g348500 | No alias | No description available | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g13818 | PTAC10, PDE312 | cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01008490001 | PTAC10, PDE312 | RNA biosynthesis.organelle machineries.RNA polymerase... | 0.03 | OrthoFinder output from all 47 species | |
| Gb_30753 | PTAC10, PDE312 | PAP3/TAC10 cofactor of plastid-encoded RNA polymerase | 0.1 | OrthoFinder output from all 47 species | |
| Gb_30755 | PTAC10, PDE312 | no hits & (original description: none) | 0.09 | OrthoFinder output from all 47 species | |
| Gb_30756 | No alias | no hits & (original description: none) | 0.09 | OrthoFinder output from all 47 species | |
| Lfl_g03268 | PTAC10, PDE312 | cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... | 0.05 | OrthoFinder output from all 47 species | |
| MA_10428299g0010 | PTAC10, PDE312 | no hits & (original description: none) | 0.03 | OrthoFinder output from all 47 species | |
| MA_10435142g0010 | PTAC10, PDE312 | no hits & (original description: none) | 0.06 | OrthoFinder output from all 47 species | |
| MA_14025g0020 | PTAC10, PDE312 | PAP3/TAC10 cofactor of plastid-encoded RNA polymerase | 0.03 | OrthoFinder output from all 47 species | |
| Mp4g08250.1 | PTAC10, PDE312 | PAP3/TAC10 cofactor of plastid-encoded RNA polymerase | 0.13 | OrthoFinder output from all 47 species | |
| Msp_g00670 | PTAC10, PDE312 | cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g28130 | PTAC10, PDE312 | cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g15554 | PTAC10, PDE312 | cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g15491 | PTAC10, PDE312 | cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... | 0.05 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0069.g016617 | PTAC10, PDE312 | cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... | 0.05 | OrthoFinder output from all 47 species | |
| Sam_g49469 | No alias | cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g49470 | No alias | cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... | 0.02 | OrthoFinder output from all 47 species | |
| Smo438805 | PTAC10, PDE312 | RNA biosynthesis.organelle machineries.RNA polymerase... | 0.06 | OrthoFinder output from all 47 species | |
| Solyc03g111050.3.1 | PTAC10, PDE312,... | PAP3/TAC10 cofactor of plastid-encoded RNA polymerase | 0.19 | OrthoFinder output from all 47 species | |
| Spa_g12662 | PTAC10, PDE312 | cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g09197 | PTAC10, PDE312 | cofactor of plastid-encoded RNA polymerase *(PAP3/TAC10)... | 0.04 | OrthoFinder output from all 47 species | |
| Zm00001e028549_P001 | PTAC10, PDE312,... | PAP3/TAC10 cofactor of plastid-encoded RNA polymerase | 0.23 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0001522 | pseudouridine synthesis | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | HCCA |
| MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | HCCA |
| MF | GO:0004832 | valine-tRNA ligase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| MF | GO:0005525 | GTP binding | IEP | HCCA |
| CC | GO:0005737 | cytoplasm | IEP | HCCA |
| CC | GO:0005759 | mitochondrial matrix | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | HCCA |
| BP | GO:0006438 | valyl-tRNA aminoacylation | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| MF | GO:0008173 | RNA methyltransferase activity | IEP | HCCA |
| BP | GO:0009451 | RNA modification | IEP | HCCA |
| MF | GO:0009982 | pseudouridine synthase activity | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| MF | GO:0016853 | isomerase activity | IEP | HCCA |
| MF | GO:0016859 | cis-trans isomerase activity | IEP | HCCA |
| MF | GO:0016866 | intramolecular transferase activity | IEP | HCCA |
| MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | HCCA |
| MF | GO:0019001 | guanyl nucleotide binding | IEP | HCCA |
| CC | GO:0031974 | membrane-enclosed lumen | IEP | HCCA |
| MF | GO:0032561 | guanyl ribonucleotide binding | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| BP | GO:0043038 | amino acid activation | IEP | HCCA |
| BP | GO:0043039 | tRNA aminoacylation | IEP | HCCA |
| CC | GO:0043233 | organelle lumen | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| CC | GO:0070013 | intracellular organelle lumen | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0140098 | catalytic activity, acting on RNA | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |