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  5. LOC_Os01g65850.1

LOC_Os01g65850.1 (PKL, GYM, CHR6, SSL2,...)


Aliases : PKL, GYM, CHR6, SSL2, CHD3, LOC_Os01g65850

Description : CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana (sp|q9s775|pkl_arath : 434.0)


Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: LOC_Os01g65850.1

Target Alias Description ECC score Gene Family Method Actions
AT4G31900 PKR2 chromatin remodeling factor, putative 0.03 OrthoFinder output from all 47 species
Aop_g09295 PKL, GYM, CHR6,... not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g06082 CHR17 ATPase component *(CHR11/CHR17) of ISWI chromatin... 0.02 OrthoFinder output from all 47 species
Ppi_g15409 CHR5 not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
MF GO:0008146 sulfotransferase activity IEP HCCA
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 845 958
IPR023780 Chromo_domain 468 490
IPR000330 SNF2_N 551 822
No external refs found!